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Report for Sequence Feature Glyma02g05250

Feature Type:gene_model
Chromosome:Gm02
Start:4262575
stop:4268186
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g05250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38630AT Annotation by Michelle Graham. TAIR10: regulatory particle non-ATPase 10 | chr4:18057357-18059459 REVERSE LENGTH=386 SoyBaseE_val: 3.00E-174ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006635GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation SoyBaseN/AISS
GO:0006833GO-bp Annotation by Michelle Graham. GO Biological Process: water transport SoyBaseN/AISS
GO:0006972GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic response SoyBaseN/AISS
GO:0006974GO-bp Annotation by Michelle Graham. GO Biological Process: response to DNA damage stimulus SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0007030GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi organization SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0030163GO-bp Annotation by Michelle Graham. GO Biological Process: protein catabolic process SoyBaseN/AISS
GO:0043161GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0043248GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome assembly SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048455GO-bp Annotation by Michelle Graham. GO Biological Process: stamen formation SoyBaseN/AISS
GO:0048528GO-bp Annotation by Michelle Graham. GO Biological Process: post-embryonic root development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0051788GO-bp Annotation by Michelle Graham. GO Biological Process: response to misfolded protein SoyBaseN/AISS
GO:0080129GO-bp Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly SoyBaseN/AISS
GO:0000502GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0008540GO-cc Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, base subcomplex SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0001653GO-mf Annotation by Michelle Graham. GO Molecular Function: peptide receptor activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG2884 KOG 26S proteasome regulatory complex, subunit RPN10/PSMD4 JGI ISS
PTHR10223Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 JGI ISS
PF02809PFAM Ubiquitin interaction motif JGI ISS
UniRef100_G7JXI6UniRef Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome non-ATPase regulatory subunit n=1 Tax=Medicago truncatula RepID=G7JXI6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JCF9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCF9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g05250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g05250 not represented in the dataset
Glyma02g05250 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g05250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g046900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g05250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g05250
>Glyma02g05250.2   sequence type=transcript   gene model=Glyma02g05250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATTTAATGCTAGCAATCGAATTTTGTTTGCAAAAGAATTGAGGACTACGTCATTACGGTCCCAAACAAAGAACAACCCTTTCTAGCAAGTAAACCCAAGTTCCCTTCTCTCTTCACGGTTACATTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCACGTTCGATCTTTCGCTTCTGAATCTCCAACGATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTTCGTGTTTTGGTGACCCCTACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGAAATAGGCGGTGAGATGAATCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAAAAAGAATAGTGTAGCTCTTGACATTGTCAATTTTGGTGAAGAAGATGAGGGGAAGACAGAGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGGCGGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAACTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAAGAAGCAGCTGCCAAAAAGGCATCAGAGGATGCTTCCAAACAGGAGAAAGATGGTGAGCAGCAAGCTAGCCCACAGGATACAACAATGACTGAGGGTGCCAGTGCAGCAGCTTCTGAAGCCGAGACTAAGAGAACTGATTTGACGGACGATGAGAATGCTCTTCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCCACAATTAACCATGAAGTGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAATCTTAATAGTCTCATTGTGGTTTTATTTGTAGTATTCCTTTGGTAGGCATATTGGTAGCATGTTGGAAAGTGATTTTACTCGGGTAGTTATTTCACGTGTTCCAATTGTTGAGTTCCCCTGCTGATTGGAACGAGTATATGTCTGTTGATTAATTACGGATCATTGAGTAGAGCACATTTCAAAAGCCTATTGTCTATGTTCATCATCAAGGGAATACATGGTTTTATGGTTAAGAATACTCCATCCTTAAAAATGTTCATCAATCTCGTCACAAATTTAATATGAATCCTTTCCTTTTTTATTTATTGTTTTTTTTATTAT
Coding sequences of Glyma02g05250
>Glyma02g05250.1   sequence type=CDS   gene model=Glyma02g05250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTTCGTGTTTTGGTGACCCCTACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGGACTAGAAATAGGCGGTGAGATGAATCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAAAAAGAATAGTGTAGCTCTTGACATTGTCAATTTTGGTGAAGAAGATGAGGGGAAGACAGAGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGGCGGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAACTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAAGAAGCAGCTGCCAAAAAGGCATCAGAGGATGCTTCCAAACAGGAGAAAGATGGTGAGCAGCAAGCTAGCCCACAGGATACAACAATGACTGAGGGTGCCAGTGCAGCAGCTTCTGAAGCCGAGACTAAGAGAACTGATTTGACGGACGATGAGAATGCTCTTCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCCACAATTAACCATGAAGTGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA

>Glyma02g05250.2   sequence type=CDS   gene model=Glyma02g05250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCTCGAGGCGACTATGATCTGTATTGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAACAGACGCCGTCAATCTTATTTGCGGTGCTAAAACCCAGTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTTCGTGTTTTGGTGACCCCTACCAGTGATCTGGGCAAGATCTTAGCTTGCATGCATGAAATAGGCGGTGAGATGAATCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAAAAAGAATAGTGTAGCTCTTGACATTGTCAATTTTGGTGAAGAAGATGAGGGGAAGACAGAGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGTACTCCTATTTTTACTGGTGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGCTGCTGCTGCAGCAGCAGCAGGCGGTGTATCTGGATTTGAGTTTGGTGTTGATCCAAACTTGGACCCTGAACTGGCTCTTGCTCTAAGAGTTTCAATGGAAGAAGAGAGAGCCAGACAAGAAGCAGCTGCCAAAAAGGCATCAGAGGATGCTTCCAAACAGGAGAAAGATGGTGAGCAGCAAGCTAGCCCACAGGATACAACAATGACTGAGGGTGCCAGTGCAGCAGCTTCTGAAGCCGAGACTAAGAGAACTGATTTGACGGACGATGAGAATGCTCTTCTACAGCAGGCCCTTGCAATGTCAATGGATGATCCCACAATTAACCATGAAGTGAGAGATACAGATATGTCTGAAGCAGCTGCTGAAGATCCCGAGTTGGCTCTAGCTCTCCAATTGTCAGTAGAAGACAGCTCAAAGGACTCGGCAAGCCAGTCTGACGTGAGTAAACTGTTGGCAGATCAGTCCTTTGTATCTTCTATCCTTGCATCGCTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGCCACAGCAGAAGAATGAAGACAAGCCACCAAATGAAGAGGAGAAAAAATAA
Predicted protein sequences of Glyma02g05250
>Glyma02g05250.1   sequence type=predicted peptide   gene model=Glyma02g05250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLEATMICIDNSEWMRNGDYSPSRFQAQTDAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKASEDASKQEKDGEQQASPQDTTMTEGASAAASEAETKRTDLTDDENALLQQALAMSMDDPTINHEVRDTDMSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPNEEEKK*

>Glyma02g05250.2   sequence type=predicted peptide   gene model=Glyma02g05250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLEATMICIDNSEWMRNGDYSPSRFQAQTDAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGGPVKHEKKMLEMIGRKLKKNSVALDIVNFGEEDEGKTEKLEALLSAVNNNDTSHIVHVPSGPNALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGFEFGVDPNLDPELALALRVSMEEERARQEAAAKKASEDASKQEKDGEQQASPQDTTMTEGASAAASEAETKRTDLTDDENALLQQALAMSMDDPTINHEVRDTDMSEAAAEDPELALALQLSVEDSSKDSASQSDVSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMQNQSEPQQKNEDKPPNEEEKK*






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