Glyma02g05160 - SoyBase

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Report for Sequence Feature Glyma02g05160

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4190917
stop:	4194520
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g05160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35950	AT	Annotation by Michelle Graham. TAIR10: RAC-like 6 \| chr4:17024051-17025514 REVERSE LENGTH=197	SoyBase	E_val: 1.00E-126	ISS
GO:0007015	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament organization	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0393	KOG	Ras-related small GTPase, Rho type	JGI		ISS
PTHR24072	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24072:SF353	Panther		JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_I1JCF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCF1_SOYBN	SoyBase	E_val: 3.00E-142	ISS
UniRef100_Q9SXT7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rac-type small GTP-binding protein n=1 Tax=Cicer arietinum RepID=Q9SXT7_CICAR	SoyBase	E_val: 9.00E-130	ISS

Expression Patterns of Glyma02g05160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g05160

Paralog	Evidence	Comments
Glyma16g23340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g05160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g046100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g05160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g05160

Limit To All Plant Sequences

>Glyma02g05160.3   sequence type=transcript   gene model=Glyma02g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTCCCGGGCTAGAAAGTTTCTTGCTCTCTCTCTGATCCCATTCCGCAACAACAACTCACATTCCCTCATGCATAATTTCCATCTCCTCCAAAAGGAAAATTGTATTGATTGGAGGAGGAGGAGAAAATTGGAAGAGTGCGTGTTTGGGTGAGTTTTCTATCAATCAAGGTCCTCAGGTGAATGATCTGAGGGTTTCATTTTTGAGGTGAGTCAAGGGTAATTGAAGATGAGCGCTTCTAAGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTGATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCTGATGTTTTCATATTAGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTGACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAAGGAGAAGAACTTAGGAAGCTGATTAATTCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAGAATGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCTTGTTCAATATTGTGATTTACTATGTTCAATCATTTGATGACAACCATTTGTTCTACCTAATATTGCCCTTCTCTCATTCCATTTCTTCACTTCGTTGAAGAAGTTGGAGTCTTTTGGGTGTTTGTTTGACATACTCTAGATCTCCTTGAAGCATAAGGTGGTTGTTGCTTTGCTTTTTTGGAGTTATTGTGAATTCTAATTGTCAAATTTGTTTTTCATGGTTCTCACCTTTTTATGAACTTATATTTTATGCATTAATACA

Coding sequences of Glyma02g05160

Limit To All Plant Sequences

>Glyma02g05160.2   sequence type=CDS   gene model=Glyma02g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCTTCTAAGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTGATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCTGATGTTTTCATATTAGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTGACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAAGGAGAAGAACTTAGGAAGCTGATTAATTCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAGAATGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCTTGTTCAATATTGTGA

>Glyma02g05160.3   sequence type=CDS   gene model=Glyma02g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCGCTTCTAAGTTCATCAAGTGTGTCACTGTTGGGGATGGAGCTGTGGGCAAAACTTGTTTGCTAATCTCCTACACCAGCAACACCTTCCCCACTGATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCTGATGTTTTCATATTAGCTTTCTCTCTCATAAGCAAGGCCAGTTATGAAAATGTTTCCAAGAAGTGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTGACCTTCGAGATGATAAGCAGTTCTTCGTAGATCATCCTGGTGCCGTACCCATTACCACTGTTCAAGGAGAAGAACTTAGGAAGCTGATTAATTCACCTGCTTACATTGAATGCAGTTCGAAATCACAACAGAATGTGAAGGCAGTATTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCAAAGCAAAAGAAAAAGAAGAGTAAAGCACAAAAGGCTTGTTCAATATTGTGA

Predicted protein sequences of Glyma02g05160

Limit To All Plant Sequences

>Glyma02g05160.2   sequence type=predicted peptide   gene model=Glyma02g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPDVPIILVGTKLDLRDDKQFFVDHPGAVPITTVQGEELRKLINSPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL*

>Glyma02g05160.3   sequence type=predicted peptide   gene model=Glyma02g05160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSASKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPDVPIILVGTKLDLRDDKQFFVDHPGAVPITTVQGEELRKLINSPAYIECSSKSQQNVKAVFDAAIRVVLQPPKQKKKKSKAQKACSIL*

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