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Report for Sequence Feature Glyma02g05010

Feature Type:gene_model
Chromosome:Gm02
Start:4077995
stop:4078612
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G18980AT Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr1:6557364-6558026 REVERSE LENGTH=220 SoyBaseE_val: 3.00E-34ISS
GO:0000041GO-bp Annotation by Michelle Graham. GO Biological Process: transition metal ion transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010106GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
PF00190PFAM Cupin JGI ISS
UniRef100_B9RPU7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nectarin-1, putative n=1 Tax=Ricinus communis RepID=B9RPU7_RICCO SoyBaseE_val: 4.00E-78ISS
UniRef100_I1JCD6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCD6_SOYBN SoyBaseE_val: 3.00E-144ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g05010 not represented in the dataset

Glyma02g05010 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g044500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g05010.1   sequence type=CDS   gene model=Glyma02g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTAAACTTCTTAGGGTTGATTTTCTTTCCCTTGCTAGTGCCTGCCTTGCTTATCATCAACAATGCTCTGGCAAGTGATCCAGATATCATATATGACTATGTTTCACCACAGAATAGCAGTGTCAATGGAAGCTTCTTTACTTACACTGGATTAAGAGGAGTCCTTCATCAAATTCCTCAATCTTTCAAGGCAACAAAAGTAACCCTGGTTGAATTTCCTGCTCTCAATGGACAAAGTATATCATATGCACTATTTCAGTACCCTGCTGGTAGCATCAACCCTCCTCACATCCACCCCCGTGCCGCCGAGTTTCTGTTCCTTGTAAGTGGCTCCCTGCAAGTAGGATTTGTTGACACTACTCGCACACTTTACACACAAAACCTTCAATCAGGTGATATGTTCATATTTCCTAAAGGGTTGATACATTATCAGTATAATCCACAATCAGTTCCAGCCACTGCTATATCTGCTTTTGGAAGTGCAAATGCAGGAACGGTTTCAATACCTCATTCTATTTTTAGTACGGGAATTGATGATGTAATCCTTGCCAAGGCTTTCAAGACTGATACTTATACAGTGAAGAAGATTAGATCTGGCCTAAACAAACCTTAG

>Glyma02g05010.1   sequence type=predicted peptide   gene model=Glyma02g05010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLNFLGLIFFPLLVPALLIINNALASDPDIIYDYVSPQNSSVNGSFFTYTGLRGVLHQIPQSFKATKVTLVEFPALNGQSISYALFQYPAGSINPPHIHPRAAEFLFLVSGSLQVGFVDTTRTLYTQNLQSGDMFIFPKGLIHYQYNPQSVPATAISAFGSANAGTVSIPHSIFSTGIDDVILAKAFKTDTYTVKKIRSGLNKP*







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