|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G18980 | AT | Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr1:6557364-6558026 REVERSE LENGTH=220 | SoyBase | E_val: 3.00E-34 | ISS |
GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
GO:0030145 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: manganese ion binding | SoyBase | N/A | ISS |
GO:0045735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity | SoyBase | N/A | ISS |
PF00190 | PFAM | Cupin | JGI | ISS | |
UniRef100_B9RPU7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nectarin-1, putative n=1 Tax=Ricinus communis RepID=B9RPU7_RICCO | SoyBase | E_val: 4.00E-78 | ISS |
UniRef100_I1JCD6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCD6_SOYBN | SoyBase | E_val: 3.00E-144 | ISS |
Glyma02g05010 not represented in the dataset |
Glyma02g05010 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.02g044500 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g05010.1 sequence type=CDS gene model=Glyma02g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCCTAAACTTCTTAGGGTTGATTTTCTTTCCCTTGCTAGTGCCTGCCTTGCTTATCATCAACAATGCTCTGGCAAGTGATCCAGATATCATATATGACTATGTTTCACCACAGAATAGCAGTGTCAATGGAAGCTTCTTTACTTACACTGGATTAAGAGGAGTCCTTCATCAAATTCCTCAATCTTTCAAGGCAACAAAAGTAACCCTGGTTGAATTTCCTGCTCTCAATGGACAAAGTATATCATATGCACTATTTCAGTACCCTGCTGGTAGCATCAACCCTCCTCACATCCACCCCCGTGCCGCCGAGTTTCTGTTCCTTGTAAGTGGCTCCCTGCAAGTAGGATTTGTTGACACTACTCGCACACTTTACACACAAAACCTTCAATCAGGTGATATGTTCATATTTCCTAAAGGGTTGATACATTATCAGTATAATCCACAATCAGTTCCAGCCACTGCTATATCTGCTTTTGGAAGTGCAAATGCAGGAACGGTTTCAATACCTCATTCTATTTTTAGTACGGGAATTGATGATGTAATCCTTGCCAAGGCTTTCAAGACTGATACTTATACAGTGAAGAAGATTAGATCTGGCCTAAACAAACCTTAG
>Glyma02g05010.1 sequence type=predicted peptide gene model=Glyma02g05010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTLNFLGLIFFPLLVPALLIINNALASDPDIIYDYVSPQNSSVNGSFFTYTGLRGVLHQIPQSFKATKVTLVEFPALNGQSISYALFQYPAGSINPPHIHPRAAEFLFLVSGSLQVGFVDTTRTLYTQNLQSGDMFIFPKGLIHYQYNPQSVPATAISAFGSANAGTVSIPHSIFSTGIDDVILAKAFKTDTYTVKKIRSGLNKP*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||