Glyma02g05001 - SoyBase

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Report for Sequence Feature Glyma02g05001

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4056954
stop:	4060469
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g05001

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G17730	AT	Annotation by Michelle Graham. TAIR10: NEP-interacting protein 2 \| chr2:7704142-7705312 FORWARD LENGTH=241	SoyBase	E_val: 9.00E-123	ISS
GO:0009299	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA transcription	SoyBase	N/A	ISS
GO:0009416	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to light stimulus	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0031351	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plastid membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22764	Panther	RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).	JGI		ISS
PTHR22764:SF23	Panther	OS10G0544600 PROTEIN	JGI		ISS
UniRef100_G7JYQ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: RING-H2 finger protein ATL4M n=1 Tax=Medicago truncatula RepID=G7JYQ7_MEDTR	SoyBase	E_val: 3.00E-137	ISS
UniRef100_G7JYQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL4M n=1 Tax=Medicago truncatula RepID=G7JYQ7_MEDTR	SoyBase	E_val: 3.00E-137	ISS

Expression Patterns of Glyma02g05001

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g05001 not represented in the dataset	Glyma02g05001 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g05001

Paralog	Evidence	Comments
Glyma16g23045	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g05001 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g044300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g05001

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g05001

Limit To All Plant Sequences

>Glyma02g05001.2   sequence type=transcript   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGGAGGCCAAAGCTATGAGCAGTGCAAACGTCAAAGAGGCGACCAACAAACATAATCAATCAAACAAACGTAACTGGAATTTCTGAAATACCCACATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAATTTTGTATCTGCAAAGTATACAAACCGTAAAAATAGCTAGGTTAACTCTTTCATTTTTTATATATAAGGGAATCTACTTTTAGGAATGTACACTATGGATAAATGTAGTCGGAACTAGGAACCAACCATCCCATGTCATTCATGAGTGGCATAATTGTAATAAGTTACTAGAAAGAAAGTTTTGACATAAATCAGCTGCTATTTCTTGTATATGGACTATTTTTCTGGCCTTGGAGTAAAGAACATGAAACAGTAGACTAGGGAGCACAAATCTTTCGTTTATTCGTGGGAAAGGGTAGAGGGGACGAGGGTATAGTAGTTTGTGGTTAGATTAGCAGTGAGA

>Glyma02g05001.3   sequence type=transcript   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAAAGTGGATACTAATTAAAATGAGTGTGCCACTGTGGCATTAAGGGACACCAGCTTTAAATGCGAGTTGGTTGAAGTATTTATGAAATAGAAGGGATAAAAACAAACGTAACTGGAATTTCTGAAATACCCACATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAATTTTGTATCTGCAAAGTATACAAACCGTAAAAATAGCTAGGTTAACTCTTTCATTTTTTATATATAAGGGAATCTACTTTTAGGAATGTACACTATGGATAAATGTAGTCGGAACTAGGAACCAACCATCCCATGTCATTCATGAGTGGCATAATTGTAATAAGTTACTAGAAAGAAAGTTTTGACATAAATCAGCTGCTATTTCTTGTATATGGACTATTTTTCTGGCCTTGGAGTAAAGAACATGAAACAGTAGACTAGGGAGCACAAATCTTTCGTTTATTCGTGGGAAAGGGTAGAGGGGACGAGGGTATAGTAGTTTGTGGTTAGATTAGCAGTGAGA

>Glyma02g05001.4   sequence type=transcript   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCAAAGTGGATACTAATTAAAATGAGTGTGCCACTGTGGCATTAAGGGACACCAGCTTTAAATGCGAGTTGGTTGAAGTATTTATGAAATAGAAGGGATAAAGTTCGTTATCTTCATCCTCTTGTAGACATTACTATATTGTTGTATTTATTTATATATATAACTCTTCCTTAAACCAAATCTGTGACAGAACAAACGTAACTGGAATTTCTGAAATACCCACATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAATTTTGTATCTGCAAAGTATACAAACCGTAAAAATAGCTAGGTTAACTCTTTCATTTTTTATATATAAGGGAATCTACTTTTAGGAATGTACACTATGGATAAATGTAGTCGGAACTAGGAACCAACCATCCCATGTCATTCATGAGTGGCATAATTGTAATAAGTTACTAGAAAGAAAGTTTTGACATAAATCAGCTGCTATTTCTTGTATATGGACTATTTTTCTGGCCTTGGAGTAAAGAACATGAAACAGTAGACTAGGGAGCACAAATCTTTCGTTTATTCGTGGGAAAGGGTAGAGGGGACGAGGGTATAGTAGTTTGTGGTTAGATTAGCAGTGAGA

Coding sequences of Glyma02g05001

Limit To All Plant Sequences

>Glyma02g05001.1   sequence type=CDS   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA

>Glyma02g05001.2   sequence type=CDS   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA

>Glyma02g05001.3   sequence type=CDS   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA

>Glyma02g05001.4   sequence type=CDS   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTGTGCCAAATCAATGCCCTTGGATGGGTTCCTTCGGGAATTTCGTTGAGAGGGTCAAAAGGGTGGGTGCCCTCTTCGTCTCTGCCATCATTGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTTGCATTAGTTGGCACTTTGTTGGGGGCTATGACTGGAGCCTTGATAGGCCAAGAGACAGAGAGTGGTTTCATTCGAGGGGCCGCTATAGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCCCTTGTTCTTTGGAAATCTGACGAATCTGGAATTGGGTGTGTCTTATACTTGATTGATGTTATTTCTAGCCTATTGAATGGGAGACTAGTGCGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCGGTTGAAATAAGCTTTGATGAGGTACAAAACCTCTTTGACATTGGTGGCGCCAAAGGTTTATCGAGAGATTCAGTTGAAAAGATCCCAAAGATCACAATTACAAGTGACAACAATGTTCATGCTTCTGGGGAGAAAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAGCTTGGGGAGACTGGTAGAAGTTTGCCTCATTGTCATCACATTTTTCACCTACCTTGCATTGATAAGTGGCTGATCAAGCATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA

Predicted protein sequences of Glyma02g05001

Limit To All Plant Sequences

>Glyma02g05001.1   sequence type=predicted peptide   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFVPNQCPWMGSFGNFVERVKRVGALFVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVISSLLNGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGGAKGLSRDSVEKIPKITITSDNNVHASGEKDSCSVCLQDFQLGETGRSLPHCHHIFHLPCIDKWLIKHGSCPLCRRDL*

>Glyma02g05001.2   sequence type=predicted peptide   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFVPNQCPWMGSFGNFVERVKRVGALFVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVISSLLNGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGGAKGLSRDSVEKIPKITITSDNNVHASGEKDSCSVCLQDFQLGETGRSLPHCHHIFHLPCIDKWLIKHGSCPLCRRDL*

>Glyma02g05001.3   sequence type=predicted peptide   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFVPNQCPWMGSFGNFVERVKRVGALFVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVISSLLNGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGGAKGLSRDSVEKIPKITITSDNNVHASGEKDSCSVCLQDFQLGETGRSLPHCHHIFHLPCIDKWLIKHGSCPLCRRDL*

>Glyma02g05001.4   sequence type=predicted peptide   gene model=Glyma02g05001   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFVPNQCPWMGSFGNFVERVKRVGALFVSAIIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLVLWKSDESGIGCVLYLIDVISSLLNGRLVRERIGPAMLSAVQSQMGAVEISFDEVQNLFDIGGAKGLSRDSVEKIPKITITSDNNVHASGEKDSCSVCLQDFQLGETGRSLPHCHHIFHLPCIDKWLIKHGSCPLCRRDL*

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