Glyma02g04980 - SoyBase

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Report for Sequence Feature Glyma02g04980

Feature Type:	gene_model
Chromosome:	Gm02
Start:	4030869
stop:	4034138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g04980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35785	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr4:16953211-16955127 REVERSE LENGTH=238	SoyBase	E_val: 6.00E-56	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
KOG0121	KOG	Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily)	JGI		ISS
PTHR15241	Panther	TRANSFORMER-2-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_G7JYS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Scaffold attachment factor B1 n=1 Tax=Medicago truncatula RepID=G7JYS1_MEDTR	SoyBase	E_val: 3.00E-94	ISS
UniRef100_I1JCC9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JCC9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g04980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g04980 not represented in the dataset	Glyma02g04980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g04980

Paralog	Evidence	Comments
Glyma16g23010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g04980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g044000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g04980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g04980

Limit To All Plant Sequences

>Glyma02g04980.4   sequence type=transcript   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTACAAAATCTTACTTATAAATATTAATTTTTTTTATTGACACAGACCAATTGAAAGTCGTACCCTATAGATAACTCTAACACCCGTGCTGATTTCGTTAATTCATTTGGGCAGCCTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAAGGAGATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACAAGGGAGTATGGCTATCGTGGTGACCGAGGTGGTGACCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTACTCACGTCGTAGGTCTCCGAGGCGTTCACCATACAGAGGTGGCCAAGATTATTCTCCCCAGCGCTCACCCTATGGTGGAAGGTCTAGGAGGGAAAGGTCTAGGTCACTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGCGGATCTAGGTGATGTTTATCTTAGCATTCTACTATTTGAACAAGGTAAGCAAAAATTTGTTGACTATATGGTGCTGTGACTACCAGTTTGCGCCTATATACAATGTATACGTTTATTGGTGGAAGCTGCTGTTCCTGTGTGACTATCAGTGTGCCTTTTCTCGAAGTCACACAGAAAGTTAGAGTGGACAAAAGTGTGGAAATCTGAATTTGAAGTATGTAAGCATTTGCTATAGGGAATTGAGACTCTGGCTTAAAAAAATTTTCTGTGTGCGTATGCCTCAAACGTTTTTGCATGTGATGCTGTCTACGATTTCAACACCTATTTTTACCCGAACAATAACTCAAATATTATACCCGAACTATTCCATTTGGGTTCAACAGTTGCAGCAGTCTCACAAAGGTTACCCTTGATCCATCACCTGCTGGTGAATTGAGTGTTGAAAAATGCTATCATTCCTCAAACTTTCCCCTAATTAAAGTTCATTTGCTTGATTCTTGAAAGAATATATTTGTCAATCATTGTAGGCTCAT

>Glyma02g04980.5   sequence type=transcript   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTACAAAATCTTACTTATAAATATTAATTTTTTTTATTGACACAGACCAATTGAAAGTCGTACCCTATAGATAACTCTAACACCCGTGCTGATTTCGTTAATTCATTTGGGCAGCCTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAAGGAGATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGAATGAATTGCATCAGCTATGTTGGCAGCGATCAGATGATCAGTTCATCCATGTGAACTTTAGTGAAACAGCTTGATCAATGGCAAACTTAAACAGCTAATCAAATGCGTCTGATCAACTAAACATAGCAACTATATTGCCCAACAACTTTACAACTTCAGCATTCACTTTCAACTCTCTACTAAACAACGGACATTATCAACAACTTTCTAATCAGGCTTTTATGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACAAGGGAGTATGGCTATCGTGGTGACCGAGGTGGTGACCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTACTCACGTCGTAGGTCTCCGAGGCGTTCACCATACAGAGGTGGCCAAGATTATTCTCCCCAGCGCTCACCCTATGGTGGAAGGTCTAGGAGGGAAAGGTCTAGGTCACTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGCGGATCTAGGTGATGTTTATCTTAGCATTCTACTATTTGAACAAGGTAAGCAAAAATTTGTTGACTATATGGTGCTGTGACTACCAGTTTGCGCCTATATACAATGTATACGTTTATTGGTGGAAGCTGCTGTTCCTGTGTGACTATCAGTGTGCCTTTTCTCGAAGTCACACAGAAAGTTAGAGTGGACAAAAGTGTGGAAATCTGAATTTGAAGTATGTAAGCATTTGCTATAGGGAATTGAGACTCTGGCTTAAAAAAATTTTCTGTGTGCGTATGCCTCAAACGTTTTTGCATGTGATGCTGTCTACGATTTCAACACCTATTTTTACCCGAACAATAACTCAAATATTATACCCGAACTATTCCATTTGGGTTCAACAGTTGCAGCAGTCTCACAAAGGTTACCCTTGATCCATCACCTGCTGGTGAATTGAGTGTTGAAAAATGCTATCATTCCTCAAACTTTCCCCTAATTAAAGTTCATTTGCTTGATTCTTGAAAGAATATATTTGTCAATCATTGTAGGCTCAT

>Glyma02g04980.6   sequence type=transcript   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTACAAAATCTTACTTATAAATATTAATTTTTTTTATTGACACAGACCAATTGAAAGTCGTACCCTATAGATAACTCTAACACCCGTGCTGATTTCGTTAATTCATTTGGGCAGCCTCTCTGTTCCAAAACCCTAATCCTTCGTCTTCCAAGGAGATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGAATGAATTGCATCAGCTATGTTGGCAGCGATCAGATGATCAGTTCATCCATGTGAACTTTAGTGAAACAGCTTGATCAATGGCAAACTTAAACAGCTAATCAAATGCGTCTGATCAACTAAACATAGCAACTATATTGCCCAACAACTTTACAACTTCAGCATTCACTTTCAACTCTCTACTAAACAACGGACATTATCAACAACTTTCTAATCAGGCTTTTATGGTATCTCACACCAGGCATTAATCTTGTGTGTGGATATAAATATTTTACACTCTTCTCAGACGCTAGATTCTGTATTTGGATGAAATTTTCTTACTGAGGATTCTCTTAATATAATGTAAAATGTTACTCTCTAGAATTTATAGAAGCAAGAAAGATGTCACTAATTCAAGTTTATTAGCTGTTTAGTGTGGTATTTGGATGTTATGTCCTTTATCAAGGAAGCACTAAAGATTAACTCCTGCATTTTCATTTCAGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACAAGGGAGTATGGCTATCGTGGTGACCGAGGTGGTGACCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTACTCACGTCGTAGGTCTCCGAGGCGTTCACCATACAGAGGTGGCCAAGATTATTCTCCCCAGCGCTCACCCTATGGTGGAAGGTCTAGGAGGGAAAGGTCTAGGTCACTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGCGGATCTAGGTGATGTTTATCTTAGCATTCTACTATTTGAACAAGGTAAGCAAAAATTTGTTGACTATATGGTGCTGTGACTACCAGTTTGCGCCTATATACAATGTATACGTTTATTGGTGGAAGCTGCTGTTCCTGTGTGACTATCAGTGTGCCTTTTCTCGAAGTCACACAGAAAGTTAGAGTGGACAAAAGTGTGGAAATCTGAATTTGAAGTATGTAAGCATTTGCTATAGGGAATTGAGACTCTGGCTTAAAAAAATTTTCTGTGTGCGTATGCCTCAAACGTTTTTGCATGTGATGCTGTCTACGATTTCAACACCTATTTTTACCCGAACAATAACTCAAATATTATACCCGAACTATTCCATTTGGGTTCAACAGTTGCAGCAGTCTCACAAAGGTTACCCTTGATCCATCACCTGCTGGTGAATTGAGTGTTGAAAAATGCTATCATTCCTCAAACTTTCCCCTAATTAAAGTTCATTTGCTTGATTCTTGAAAGAATATATTTGTCAATCATTGTAGGCTCAT

Coding sequences of Glyma02g04980

Limit To All Plant Sequences

>Glyma02g04980.1   sequence type=CDS   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACAAGGGAGTATGGCTATCGTGGTGACCGAGGTGGTGACCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTACTCACGTCGTAGGTCTCCGAGGCGTTCACCATACAGAGGTGGCCAAGATTATTCTCCCCAGCGCTCACCCTATGGTGGAAGGTCTAGGAGGGAAAGGTCTAGGTCACTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGCGGATCTAGTTTGCGCCTATATACAATGTATACGTTTATTGGTGGAAGCTGCTGTTCCTGTGTGACTATCAGTGTGCCTTTTCTCGAAGTCACACAGAAAGTTAGAGTGGACAAAAGTGTGGAAATCTGA

>Glyma02g04980.4   sequence type=CDS   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGTCACGAAGAAAACGTGCAAGAACTCCAACCCCAGGGCACTATCTTGGACTGAAAAACACAAGGGAGTATGGCTATCGTGGTGACCGAGGTGGTGACCGGGGAAGGTATCGCGATGGTCCTGACCGTGACAATTACTCACGTCGTAGGTCTCCGAGGCGTTCACCATACAGAGGTGGCCAAGATTATTCTCCCCAGCGCTCACCCTATGGTGGAAGGTCTAGGAGGGAAAGGTCTAGGTCACTTCCTTATTCTCCACATGGTAGCCCAGACAGGAAGTATGCTCGCGGATCTAGGTGA

>Glyma02g04980.5   sequence type=CDS   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGAATGAATTGCATCAGCTATGTTGGCAGCGATCAGATGATCAGTTCATCCATGTGAACTTTAGTGAAACAGCTTGA

>Glyma02g04980.6   sequence type=CDS   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATTCTCCCCTCGCAAGGAACTCAAGGTCACCTTCCCCATGGAAAGCTCAGTCGAGATCGAGATCTAGGTCAAGGTCGAGATCTAGGTCGAGGTCTAGGCCTAGACAAAGGCCAAGATCGCGTTCTAGAAGTCGTGGCAGGTCAAGGTCACCAATTCGTGGAAGGTCAAGGTCACCAATTCATGGAAGGTCTGAACCTACAAATCCTGGTGACACACTTTATGTAACTGGTCTATCTTCGAGGGTCACCGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAAGATGCGGAGCGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTTGAGCGGAATGAATTGCATCAGCTATGTTGGCAGCGATCAGATGATCAGTTCATCCATGTGAACTTTAGTGAAACAGCTTGA

Predicted protein sequences of Glyma02g04980

Limit To All Plant Sequences

>Glyma02g04980.1   sequence type=predicted peptide   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRSRPRQRPRSRSRSRGRSRSPIRGRSRSPIHGRSEPTNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTREYGYRGDRGGDRGRYRDGPDRDNYSRRRSPRRSPYRGGQDYSPQRSPYGGRSRRERSRSLPYSPHGSPDRKYARGSSLRLYTMYTFIGGSCCSCVTISVPFLEVTQKVRVDKSVEI*

>Glyma02g04980.4   sequence type=predicted peptide   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRSRPRQRPRSRSRSRGRSRSPIRGRSRSPIHGRSEPTNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTREYGYRGDRGGDRGRYRDGPDRDNYSRRRSPRRSPYRGGQDYSPQRSPYGGRSRRERSRSLPYSPHGSPDRKYARGSR*

>Glyma02g04980.5   sequence type=predicted peptide   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRSRPRQRPRSRSRSRGRSRSPIRGRSRSPIHGRSEPTNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITVERNELHQLCWQRSDDQFIHVNFSETA*

>Glyma02g04980.6   sequence type=predicted peptide   gene model=Glyma02g04980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADSPLARNSRSPSPWKAQSRSRSRSRSRSRSRSRPRQRPRSRSRSRGRSRSPIRGRSRSPIHGRSEPTNPGDTLYVTGLSSRVTERDLEEHFSKEGKVSSCFLVVEPRTRISRGFAFVTMESAEDAERCIKYLNQSVLEGRYITVERNELHQLCWQRSDDQFIHVNFSETA*

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