Glyma02g04820 - SoyBase

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Report for Sequence Feature Glyma02g04820

Feature Type:	gene_model
Chromosome:	Gm02
Start:	3943317
stop:	3946663
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g04820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12500	AT	Annotation by Michelle Graham. TAIR10: basic chitinase \| chr3:3962501-3963984 REVERSE LENGTH=335	SoyBase	E_val: 8.00E-144	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0009871	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0016998	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004568	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chitinase activity	SoyBase	N/A	ISS
GO:0008061	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chitin binding	SoyBase	N/A	ISS
KOG4742	KOG	Predicted chitinase	JGI		ISS
PTHR22595	Panther	CHITINASE-RELATED	JGI		ISS
PTHR22595:SF11	Panther	CLASS I CHITINASE	JGI		ISS
PF00182	PFAM	Chitinase class I	JGI		ISS
PF00187	PFAM	Chitin recognition protein	JGI		ISS
UniRef100_Q9SDY6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chitinase class I n=2 Tax=Glycine max RepID=Q9SDY6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SDY6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Chitinase class I n=2 Tax=Glycine max RepID=Q9SDY6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g04820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g04820 not represented in the dataset	Glyma02g04820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g04820

Paralog	Evidence	Comments
Glyma16g22680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g04820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g042500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g04820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g04820

Limit To All Plant Sequences

>Glyma02g04820.2   sequence type=transcript   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCATCTATAAATATCGTCATTGCCCTAGTGCAACATATACAATTCACATCATACACCGTTTCTTTCACTTCACAAAAATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGGCAAGTGCACCAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTAGCGATCATAGGGATTTGAATTTGACTTGGAAAATGAACGAGCTGTTCATGTTAATTTTACTTTCTAGATTAGATGCATGTTAAAAGTATCCTCTAGAAACTCTGTTCATAGTCCTCCAAGAGCACATCCTGGCGTAATGGATCACTACCGGAAAGAACTTTCCATTGACTAGCCAAGTCAAGTCAAGGGAAATATCATAATCAAATGGATAGATGTGGGAGACTAAGATCTGAAAGATATGTATTGTATTTCCTCCGAGGGATCGAAAGCCTAGCCTCTTTTGTCAATGGTCAGAAAGTAACGCAAACAACACCACATCCTACAAGGTT

>Glyma02g04820.3   sequence type=transcript   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCATCTATAAATATCGTCATTGCCCTAGTGCAACATATACAATTCACATCATACACCGTTTCTTTCACTTCACAAAAATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTACTGCCAGATGATGGGAATAAGCCCCGGAGACAACTTGGATTGTAACAATCAAAGGCCATTTGCTTAAGCAAATTGCTCACATATATCATCCATATAGAGAATAAATAGTATGTAATAAAGGATCTACCATGATCTTACATGTACTGGGAAACTTGTTTCTAAAGAAGTTCCCCTTATCTTGATTAAATAAGAAACTTTAATATTTTACCACCTTTTATGACAAAGAGTTGCTGATGAACTATATAATTAGATAAACTAATGA

Coding sequences of Glyma02g04820

Limit To All Plant Sequences

>Glyma02g04820.1   sequence type=CDS   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGGCAAGTGCACCAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTACTGCCAGATGATGGGAATAAGCCCCGGAGACAACTTGGATTGTAACAATCAAAGGCCATTTGCTTAA

>Glyma02g04820.2   sequence type=CDS   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGGTGGGTGGGCAAGTGCACCAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTAG

>Glyma02g04820.3   sequence type=CDS   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAACATGAAATTGTGTTCGGTGATGCTATGCTTATCACTAGCGTTCCTTCTTGGGGCCACAGCAGAACAATGTGGCACACAAGCTGGTGGAGCGTTATGCCCAAATAGATTATGTTGCAGCAAATTTGGGTGGTGTGGTGACACAGATTCCTACTGTGGAGAAGGTTGCCAGAGCCAATGCAAATCTGCAACACCCTCAACACCAACTCCAACAACACCTAGTAGTGGTGGAGATATTAGCAGACTCATTAGCTCTTCTCTCTTTGATCAAATGCTTAAATACCGAAACGATGGCCGCTGTTCTGGCCATGGATTCTACAGATATGATGCTTTCATTGCCGCTGCTGGCTCTTTCAATGGCTTTGGCACAACCGGTGATGACAACACTCGCAAGAAGGAGATTGCTGCTTTCTTGGCTCAAACTTCTCATGAAACCACAGATGGTCCATATGCGTGGGGGTATTGTTTTATCAACGAACAAAACCAGGCAACTTATTGTGATGGTGGGAATTGGCCATGTGCTGCTGGTAAAAAATATTATGGCCGAGGACCAATCCAACTTACACACAACTACAATTACGGGCAAGCTGGCAAAGCACTTGGTCTGGATTTGATAAACAATCCGGATCTTGTAGCCACAGACGCAACCGTGTCATTCAAGACAGCCCTATGGTTTTGGATGACTGCACAGGGAAACAAGCCATCAAGCCATGATGTGATCACTGGAAGATGGACTCCATCTAGTGCTGACAGCTCAGCGGGTCGGGCTCCTGGCTACGGTGTCATCACCAACATAATCAACGGTGGCCTCGAATGCGGCCACGGCCAGGATAATCGGGTCCAAGATCGGATCGGCTTCTACCGAAGGTACTGCCAGATGATGGGAATAAGCCCCGGAGACAACTTGGATTGTAACAATCAAAGGCCATTTGCTTAA

Predicted protein sequences of Glyma02g04820

Limit To All Plant Sequences

>Glyma02g04820.1   sequence type=predicted peptide   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNMKLCSVMLCLSLAFLLGATAEQCGTQAGGALCPNRLCCSKFGWCGDTDSYCGEGCQSQCKSATPSTPTPTTPSSGGDISRLISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSFNGFGTTGDDNTRKKEIAAFLAQTSHETTGGWASAPDGPYAWGYCFINEQNQATYCDGGNWPCAAGKKYYGRGPIQLTHNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNKPSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECGHGQDNRVQDRIGFYRRYCQMMGISPGDNLDCNNQRPFA*

>Glyma02g04820.2   sequence type=predicted peptide   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNMKLCSVMLCLSLAFLLGATAEQCGTQAGGALCPNRLCCSKFGWCGDTDSYCGEGCQSQCKSATPSTPTPTTPSSGGDISRLISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSFNGFGTTGDDNTRKKEIAAFLAQTSHETTGGWASAPDGPYAWGYCFINEQNQATYCDGGNWPCAAGKKYYGRGPIQLTHNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNKPSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECGHGQDNRVQDRIGFYRR*

>Glyma02g04820.3   sequence type=predicted peptide   gene model=Glyma02g04820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNMKLCSVMLCLSLAFLLGATAEQCGTQAGGALCPNRLCCSKFGWCGDTDSYCGEGCQSQCKSATPSTPTPTTPSSGGDISRLISSSLFDQMLKYRNDGRCSGHGFYRYDAFIAAAGSFNGFGTTGDDNTRKKEIAAFLAQTSHETTDGPYAWGYCFINEQNQATYCDGGNWPCAAGKKYYGRGPIQLTHNYNYGQAGKALGLDLINNPDLVATDATVSFKTALWFWMTAQGNKPSSHDVITGRWTPSSADSSAGRAPGYGVITNIINGGLECGHGQDNRVQDRIGFYRRYCQMMGISPGDNLDCNNQRPFA*

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