SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G35630 | AT | Annotation by Michelle Graham. TAIR10: phosphoserine aminotransferase | chr4:16904205-16905497 FORWARD LENGTH=430 | SoyBase | E_val: 0 | ISS |
| GO:0006564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: L-serine biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004648 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: O-phospho-L-serine:2-oxoglutarate aminotransferase activity | SoyBase | N/A | ISS |
| GO:0030170 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding | SoyBase | N/A | ISS |
| KOG2790 | KOG | Phosphoserine aminotransferase | JGI | ISS | |
| PTHR21152 | Panther | AMINOTRANSFERASE CLASS V | JGI | ISS | |
| PTHR21152:SF1 | Panther | PHOSPHOSERINE AMINOTRANSFERASE | JGI | ISS | |
| PF00266 | PFAM | Aminotransferase class-V | JGI | ISS | |
| UniRef100_I1JCA9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Phosphoserine aminotransferase n=1 Tax=Glycine max RepID=I1JCA9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JCA9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoserine aminotransferase n=1 Tax=Glycine max RepID=I1JCA9_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g04760 not represented in the dataset |
Glyma02g04760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g041900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g04760.1 sequence type=CDS gene model=Glyma02g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCATCAATCTCAACCTCACCTCACTCACACCTTCTTCTTCCCCAAAACCAGAATCACTTTCTCTCCGAAAGTGGGACCCACGCCTCATTCACACCCTCTCCGCGCCCTTTCCGGCCCATCTCCATTAAATGCACCTCCACCCCGGCCCAAGTTCAGACCCATGACCCCCTCCCGGCCCAAACCCGGGCCCAAGAGCGCGTCTTCAACTTCGCCGCTGGGCCCGCCACCCTCCCGGAGACCGTCCTCCGCCGCGCCCAGTCGGAGCTCCACGTCTGGCGCGGATCCGGCATGAGCGTCATGGAGATGAGCCACCGCGGCAAGGAATTCAAGTCCATCATCGAAAAAGCCGAGTCCGATCTCCGTACCCTCCTCCAAATCCCGTCGGAATATTCCGTCCTCTTCCTCCAGGGCGGCGCCACCACCCAGTTCGCCGCCGTCCCGCTCAACCTCTGTTCCCCCGCCGACGCCGTCGATTATATCATCACCGGCTCCTGGAGCGACAAGGCCTTCAAGGAGGCCCAGAAATTCTCCAAGCCCACTATAATCTGGTCTGGAAAACCCGAAAAATACACAAAGGTTCCATCTTTCGAAGCTTTGCAGCAAAACCCAGATGCAAAGTATTTACACATATGCGCAAATGAGACAATTCATGGGGTTGAGTATAAGAACTACCCAACCCCAAAGAACCCTAATGCGGTTCTTGTTGCTGACATGTCTTCAAATTTCTGTTCCAAACCCGTGGACGTGTCAAAATTTGGTGTCATCTATGCTGGCGCGCAGAAGAACGTGGGGCCCTCTGGGGTCACCATTGTGATCATAAGAAACGATCTAATCGGACATGCACAAGAATCGACCCCAATAATGCTTGATTACAAGATTCACGCCGAGAACAATTCTCTCTACAACACCCCACCGTGCTACGGGATTTACATGTGTGGGTTGGTTTTTGAGGACTTGTTGGAGCAGGGTGGGTTGGGTGAGGTTGAGAAGAAGAATGTGAAGAAAGCTGAGGTTTTGTATAACACAATTGATGGAAGCAATGGTTTTTATAAGTGTCCGGTGGAGAAGTCGGTGAGGTCGTTGATGAATGTGCCGTTTACGTTGGAGAAGCCGGAGCTGGAGGGCGAGTTTATCAAGGAGGCTGCGAAGGAGAACATGGTTCAGCTTAAAGGGCATAGGTCTGTGGGAGGTATGAGAGCTTCTATTTACAATGCTATGCCTTTGGCTGGGGTTCAGAAATTGGTCGCTTTCATGAAGGATTTTCAGGCCAGGCATGCTTAG
>Glyma02g04760.1 sequence type=predicted peptide gene model=Glyma02g04760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSISTSPHSHLLLPQNQNHFLSESGTHASFTPSPRPFRPISIKCTSTPAQVQTHDPLPAQTRAQERVFNFAAGPATLPETVLRRAQSELHVWRGSGMSVMEMSHRGKEFKSIIEKAESDLRTLLQIPSEYSVLFLQGGATTQFAAVPLNLCSPADAVDYIITGSWSDKAFKEAQKFSKPTIIWSGKPEKYTKVPSFEALQQNPDAKYLHICANETIHGVEYKNYPTPKNPNAVLVADMSSNFCSKPVDVSKFGVIYAGAQKNVGPSGVTIVIIRNDLIGHAQESTPIMLDYKIHAENNSLYNTPPCYGIYMCGLVFEDLLEQGGLGEVEKKNVKKAEVLYNTIDGSNGFYKCPVEKSVRSLMNVPFTLEKPELEGEFIKEAAKENMVQLKGHRSVGGMRASIYNAMPLAGVQKLVAFMKDFQARHA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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