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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G22540 | AT | Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240 | SoyBase | E_val: 7.00E-115 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
| GO:0009556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microsporogenesis | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0010076 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0010582 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0045892 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048438 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral whorl development | SoyBase | N/A | ISS |
| GO:0048481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ovule development | SoyBase | N/A | ISS |
| GO:0052543 | GO-bp | Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000900 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: translation repressor activity, nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG0014 | KOG | MADS box transcription factor | JGI | ISS | |
| PTHR11945 | Panther | MADS BOX PROTEIN | JGI | ISS | |
| PTHR11945:SF75 | Panther | SVP (SHORT VEGETATIVE PHASE), TRANSCRIPTION FACTOR | JGI | ISS | |
| PF00319 | PFAM | SRF-type transcription factor (DNA-binding and dimerisation domain) | JGI | ISS | |
| PF01486 | PFAM | K-box region | JGI | ISS | |
| UniRef100_E3NYP9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Short vegetative phase-like protein n=2 Tax=Glycine max RepID=E3NYP9_SOYBN | SoyBase | E_val: 6.00E-163 | ISS |
| UniRef100_E3NYP9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Short vegetative phase-like protein n=2 Tax=Glycine max RepID=E3NYP9_SOYBN | SoyBase | E_val: 6.00E-163 | ISS |
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Glyma02g04710 not represented in the dataset |
Glyma02g04710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g02880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g041500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g04710.2 sequence type=transcript gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATACTTTTTCCACTTTTGCCACACTTCCACACGCTCATCCTCTCTCTCTTTCCTTCATTGGTGGCTTTCAACCCAAAGCTGAAATCATCTAAACATGGCAAACCAAACCGAACCAAAAACCAACATTCCTAATATCAACGCCTTCCCCCAATAAGGAAAGTAAAAATCAACAAGTACATCCTTACTCAGCTCTCTCTTTCAACAACATCCCACCACACACTAACACCAACTCCAACTCCAACTCCAAGTCTTCCCCTAACTAACACCACTAACAACAATCACTAAAAAAAGAAAGAAAATTTACCCTGATCGCAGGATCTCCGAACAAAGCTTTGATTTCACAAAAGCTAAATTTAGATAAACACCTGCATATTAAATTTTTCTGCTCTATACATGCATCACATGTCCCTCACACTAAACAAAAGAAAAACACCACCACCCTTTGCTTTTGCTTTTCTATAAGTAGTCAACGGCTCAGCCTTAATTTCTTTGCTTTTTTTAGGTTAAGGTACATGGTGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTATGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAGCTCTTTGAGTACTCAAGCTCAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAGGATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAATTGCTCTAGATTGAGCAAGGAAGTGGCTGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGAGGTCTCTTGAAACTGGATTGGGCCGTGTAATAGAAAAGAAGGGTGAGAAGATTATGAGTGAGATCACTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTTAAACGTCACGTATGATATACTTTTTATTTTCCACTCTTAATTTTTTTTTTGGGTGTGTACATATTTTTTTCTTCAAGCAAATTTGTCCCTGAATATGATTTATCTATTATGCAATTAATTATGAGAGCATATAATATAAAATTAAGCTGTATATATAATATGTATGTGTTGCACGTACGAAAGGTGGCGGGCATAATTAATGGCCAAAGGCATGGTGGTGCCGAATCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCAGAGTCTGTTACGTACGTTTGCAATTCCACTGGACCCCCCCAAGACTTTGAAAGCTCAGATACTTCCCTCAAATTGGGGCTACCATACTCCGGCTGATGAGAAAGTGTGTGGGGCGATAAAATTAACCCAGGCAAAAATTCACAAGATTATGATATAATTTTCATTAATGATTATGTCTCTGGTATGTCCCCTTGGTGTGTAGAGTTAGTATTATATATTAGTAAATTGTAAGGACTTATGTTATGGGGTACTCTAATGTCATTCGGAATTAATTGTTTTTAAAATTAAAAGAAACAAATTCCTAGTAATGTTTTTAATAATTGGATTTTTTTGGCTAGTGTAATCCTTGCATCTCTGGCTTACACGAGTAAAAGTATTTTAGGCTTTAGATGATTTTA >Glyma02g04710.3 sequence type=transcript gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTATACTTTTTCCACTTTTGCCACACTTCCACACGCTCATCCTCTCTCTCTTTCCTTCATTGGTGGCTTTCAACCCAAAGCTGAAATCATCTAAACATGGCAAACCAAACCGAACCAAAAACCAACATTCCTAATATCAACGCCTTCCCCCAATAAGGAAAGTAAAAATCAACAAGTACATCCTTACTCAGCTCTCTCTTTCAACAACATCCCACCACACACTAACACCAACTCCAACTCCAACTCCAAGTCTTCCCCTAACTAACACCACTAACAACAATCACTAAAAAAAGAAAGAAAATTTACCCTGATCGCAGGATCTCCGAACAAAGCTTTGATTTCACAAAAGCTAAATTTAGATAAACACCTGCATATTAAATTTTTCTGCTCTATACATGCATCACATGTCCCTCACACTAAACAAAAGAAAAACACCACCACCCTTTGCTTTTGCTTTTCTATAAGTAGTCAACGGCTCAGCCTTAATTTCTTTGCTTTTTTTAGGTTAAGGTACATGGTGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTATGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAGCTCTTTGAGTACTCAAGCTCAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAGGATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAATTGCTCTAGATTGAGCAAGGAAGTGGCTGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGAGGTCTCTTGAAACTGGATTGGGCCGTGTAATAGAAAAGAAGGGTGAGAAGATTATGAGTGAGATCACTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTTAAACGTCACTCTTCAGAGTCTGTTACGTACGTTTGCAATTCCACTGGACCCCCCCAAGACTTTGAAAGCTCAGATACTTCCCTCAAATTGGGGCTACCATACTCCGGCTGATGAGAAAGTGTGTGGGGCGATAAAATTAACCCAGGCAAAAATTCACAAGATTATGATATAATTTTCATTAATGATTATGTCTCTGGTATGTCCCCTTGGTGTGTAGAGTTAGTATTATATATTAGTAAATTGTAAGGACTTATGTTATGGGGTACTCTAATGTCATTCGGAATTAATTGTTTTTAAAATTAAAAGAAACAAATTCCTAGTAATGTTTTTAATAATTGGATTTTTTTGGCTAGTGTAATCCTTGCATCTCTGGCTTACACGAGTAAAAGTATTTTAGGCTTTAGATGATTTTA
>Glyma02g04710.1 sequence type=CDS gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTATGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAGCTCTTTGAGTACTCAAGCTCAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAGGATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAATTGCTCTAGATTGAGCAAGGAAGTGGCTGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGAGGTCTCTTGAAACTGGATTGGGCCGTGTAATAGAAAAGAAGGGTGAGAAGATTATGAGTGAGATCACTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTTAAACGTCACGTGGCGGGCATAATTAATGGCCAAAGGCATGGTGGTGCCGAATCTGAGAACTTTGTTATGGATGAAGGTCAGTCTTCAGAGTCTGTTACGTACGTTTGCAATTCCACTGGACCCCCCCAAGACTTTGAAAGCTCAGATACTTCCCTCAAATTGGGGCTACCATACTCCGGCTGA >Glyma02g04710.2 sequence type=CDS gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTATGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAGCTCTTTGAGTACTCAAGCTCAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAGGATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAATTGCTCTAGATTGAGCAAGGAAGTGGCTGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGAGGTCTCTTGAAACTGGATTGGGCCGTGTAATAGAAAAGAAGGGTGAGAAGATTATGAGTGAGATCACTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTTAAACGTCACGTATGA >Glyma02g04710.3 sequence type=CDS gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCCACGGCGAGGCAGGTCACGTTCTCCAAGCGTCGCAGAGGGCTCTTCAAGAAAGCTGAGGAGCTTTCGGTTATGTGTGATGCTGATGTTGCCCTCATAATCTTCTCTTCCACTGGGAAGCTCTTTGAGTACTCAAGCTCAAGCATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAACCTAGCAAGGATGGAACAACCATCTCTCGAGTTGCAGCTAGTTGAAAACAGCAATTGCTCTAGATTGAGCAAGGAAGTGGCTGAAAAGAGCCATCAACTAAGGCAGCTGAGAGGAGAGGATCTTCAAGGCTTAAACATAGAAGAATTGCAACAATTGGAGAGGTCTCTTGAAACTGGATTGGGCCGTGTAATAGAAAAGAAGGGTGAGAAGATTATGAGTGAGATCACTGATCTCCAAAGAAAGGGGATGCTATTGATGGAAGAGAACGAGCGACTTAAACGTCACTCTTCAGAGTCTGTTACGTACGTTTGCAATTCCACTGGACCCCCCCAAGACTTTGAAAGCTCAGATACTTCCCTCAAATTGGGGCTACCATACTCCGGCTGA
>Glyma02g04710.1 sequence type=predicted peptide gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVMCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITDLQRKGMLLMEENERLKRHVAGIINGQRHGGAESENFVMDEGQSSESVTYVCNSTGPPQDFESSDTSLKLGLPYSG* >Glyma02g04710.2 sequence type=predicted peptide gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVMCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITDLQRKGMLLMEENERLKRHV* >Glyma02g04710.3 sequence type=predicted peptide gene model=Glyma02g04710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVMCDADVALIIFSSTGKLFEYSSSSMKEILERHHLHSKNLARMEQPSLELQLVENSNCSRLSKEVAEKSHQLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITDLQRKGMLLMEENERLKRHSSESVTYVCNSTGPPQDFESSDTSLKLGLPYSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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