SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G38100 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:17887033-17888177 REVERSE LENGTH=193 | SoyBase | E_val: 5.00E-41 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| UniRef100_C6SXE0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SXE0_SOYBN | SoyBase | E_val: 3.00E-142 | ISS |
| UniRef100_G7JXQ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Glutamyl-tRNA synthetase n=1 Tax=Medicago truncatula RepID=G7JXQ3_MEDTR | SoyBase | E_val: 5.00E-68 | ISS |
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Glyma02g04600 not represented in the dataset |
Glyma02g04600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g03020 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g040600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g04600.2 sequence type=transcript gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAAAACCCTAGAAGCAACACTTATAAAAAGGGGCATTGAATCCCTAATGTTTCATCACAAATAACAATGGGGCTTTGTACAGTTCAGCCTATCACTCTCTCGAAGCTTCCTAACGCCTCCTCTTTTCTTCCTAAACCTAAACCCTCTCTTCCTCAGTCTTACACTCCCTCCGCCGCACACTTATCTCGGTCAGTTTGCTTAAGGAATCTGTCGCCAAAGGCAACATCTTCTGAAGAAGAAAGGTCCAGTGGGGGAAGTCAATTTTTCAATGAGAAGCGCGATGGTGTAATAATCCTGGAGGATGTTAAAGAGGATAATAATAAGAATGAGTTCGATAAAACGGTGATTGAAGATACAAAGCAAGACTTGTTTGATGATGATGGACAGGGTCTATCATTTGATTTGCTGGATAAGCTCAATTTTGATACTGATGACACTGGTTCCATTGTCGTGTATGGGGGTGGTGCCTTGGTGGCTCTGTGGCTAACATCAGCGGTTATTGGCGCAATTGATTCTATCCCATTGTTTCCCAAGCTGTTGGAAGTTGTGGGGCTTGCATATACAGTGTGGTTCACTTCCCGTTACCTGCTTTTCAAGGTACTTACCTAATTTTTACCATTTTGGCTGATTTTGTGCATCTTGA >Glyma02g04600.3 sequence type=transcript gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAAAACCCTAGAAGCAACACTTATAAAAAGGGGCATTGAATCCCTAATGTTTCATCACAAATAACAATGGGGCTTTGTACAGTTCAGCCTATCACTCTCTCGAAGCTTCCTAACGCCTCCTCTTTTCTTCCTAAACCTAAACCCTCTCTTCCTCAGTCTTACACTCCCTCCGCCGCACACTTATCTCGTACTTTCTCTATTCCTTTTAATTTCCCCATTCAATCCTAACCATAACCTAGGATTCGTTCTATTTGGTGTTTTTTTTTAATTGTTCTCTTCTTAATTTTGCTTAAATTGTTTTCTTGCGGGTTGCATGGCATTAATTTTGGAGCTATTACTGAAGCTACATATTTGTGATTTCTTGTTTTGTTTTGTTGGGTTCTATGTCATGGCAGGGTCAGTTTGCTTAAGGAATCTGTCGCCAAAGGCAACATCTTCTGAAGAAGAAAGGTCCAGTGGGGGAAGTCAATTTTTCAATGAGAAGCGCGATGGTGTAATAATCCTGGAGGATGTTAAAGAGGATAATAATAAGAATGAGTTCGATAAAACGGTGATTGAAGATACAAAGCAAGACTTGTTTGATGATGATGGACAGGGTCTATCATTTGATTTGCTGGATAAGCTCAATTTTGATACTGATGACACTGGTTCCATTGTCGTGTATGGGGGTGGTGCCTTGGTGGCTCTGTGGCTAACATCAGCGGTTATTGGCGCAATTGATTCTATCCCATTGTTTCCCAAGCTGTTGGAAGTTGTGGGGCTTGCATATACAGTGTGGTTCACTTCCCGTTACCTGCTTTTCAAGCAAAATAGAGATGAATTGGGTGCTAAAATAGAAGAGCTCAAGGGACAAATTTTTGGTTCAGAGGATAATTGATTGCTCTGAACGGATGAAATGTTTGTGCTGCCACTTAAAACAATGTACAGTAACAGTTACCGTTGTTTTAGTTTTGGCTGAGATGTAAAAATATAGTCAGCACCAGATTTCTCTTATTCAAGTTTTTGACTGCTATTGCCAAATTGTCTCTAGTGCATTGTGGGTGCACGTTGCATTTCTTTATTGTTATTATACGATCTAGATTTTTTTAAAAATTGTAACAAGAAAAATTGACGACGTATGATTTCCAAAATCTCACTCGATATCTAACATTATGGACGTGCATGGTTTCC
>Glyma02g04600.1 sequence type=CDS gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGCTTTGTACAGTTCAGCCTATCACTCTCTCGAAGCTTCCTAACGCCTCCTCTTTTCTTCCTAAACCTAAACCCTCTCTTCCTCAGTCTTACACTCCCTCCGCCGCACACTTATCTCGGTCAGTTTGCTTAAGGAATCTGTCGCCAAAGGCAACATCTTCTGAAGAAGAAAGGTCCAGTGGGGGAAGTCAATTTTTCAATGAGAAGCGCGATGGTGTAATAATCCTGGAGGATGTTAAAGAGGATAATAATAAGAATGAGTTCGATAAAACGGTGATTGAAGATACAAAGCAAGACTTGTTTGATGATGATGGACAGGGTCTATCATTTGATTTGCTGGATAAGCTCAATTTTGATACTGATGACACTGGTTCCATTGTCGTGTATGGGGGTGGTGCCTTGGTGGCTCTGTGGCTAACATCAGCGGTTATTGGCGCAATTGATTCTATCCCATTGTTTCCCAAGCTGTTGGAAGTTGTGGGGCTTGCATATACAGTGTGGTTCACTTCCCGTTACCTGCTTTTCAAGCAAAATAGAGATGAATTGGGTGCTAAAATAGAAGAGCTCAAGGGACAAATTTTTGGTTCAGAGGATAATTGA >Glyma02g04600.2 sequence type=CDS gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGCTTTGTACAGTTCAGCCTATCACTCTCTCGAAGCTTCCTAACGCCTCCTCTTTTCTTCCTAAACCTAAACCCTCTCTTCCTCAGTCTTACACTCCCTCCGCCGCACACTTATCTCGGTCAGTTTGCTTAAGGAATCTGTCGCCAAAGGCAACATCTTCTGAAGAAGAAAGGTCCAGTGGGGGAAGTCAATTTTTCAATGAGAAGCGCGATGGTGTAATAATCCTGGAGGATGTTAAAGAGGATAATAATAAGAATGAGTTCGATAAAACGGTGATTGAAGATACAAAGCAAGACTTGTTTGATGATGATGGACAGGGTCTATCATTTGATTTGCTGGATAAGCTCAATTTTGATACTGATGACACTGGTTCCATTGTCGTGTATGGGGGTGGTGCCTTGGTGGCTCTGTGGCTAACATCAGCGGTTATTGGCGCAATTGATTCTATCCCATTGTTTCCCAAGCTGTTGGAAGTTGTGGGGCTTGCATATACAGTGTGGTTCACTTCCCGTTACCTGCTTTTCAAGGTACTTACCTAA >Glyma02g04600.3 sequence type=CDS gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATTAATTTTGGAGCTATTACTGAAGCTACATATTTGTGATTTCTTGTTTTGTTTTGTTGGGTTCTATGTCATGGCAGGGTCAGTTTGCTTAAGGAATCTGTCGCCAAAGGCAACATCTTCTGAAGAAGAAAGGTCCAGTGGGGGAAGTCAATTTTTCAATGAGAAGCGCGATGGTGTAATAATCCTGGAGGATGTTAAAGAGGATAATAATAAGAATGAGTTCGATAAAACGGTGATTGAAGATACAAAGCAAGACTTGTTTGATGATGATGGACAGGGTCTATCATTTGATTTGCTGGATAAGCTCAATTTTGATACTGATGACACTGGTTCCATTGTCGTGTATGGGGGTGGTGCCTTGGTGGCTCTGTGGCTAACATCAGCGGTTATTGGCGCAATTGATTCTATCCCATTGTTTCCCAAGCTGTTGGAAGTTGTGGGGCTTGCATATACAGTGTGGTTCACTTCCCGTTACCTGCTTTTCAAGCAAAATAGAGATGAATTGGGTGCTAAAATAGAAGAGCTCAAGGGACAAATTTTTGGTTCAGAGGATAATTGA
>Glyma02g04600.1 sequence type=predicted peptide gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLCTVQPITLSKLPNASSFLPKPKPSLPQSYTPSAAHLSRSVCLRNLSPKATSSEEERSSGGSQFFNEKRDGVIILEDVKEDNNKNEFDKTVIEDTKQDLFDDDGQGLSFDLLDKLNFDTDDTGSIVVYGGGALVALWLTSAVIGAIDSIPLFPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN* >Glyma02g04600.2 sequence type=predicted peptide gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLCTVQPITLSKLPNASSFLPKPKPSLPQSYTPSAAHLSRSVCLRNLSPKATSSEEERSSGGSQFFNEKRDGVIILEDVKEDNNKNEFDKTVIEDTKQDLFDDDGQGLSFDLLDKLNFDTDDTGSIVVYGGGALVALWLTSAVIGAIDSIPLFPKLLEVVGLAYTVWFTSRYLLFKVLT* >Glyma02g04600.3 sequence type=predicted peptide gene model=Glyma02g04600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALILELLLKLHICDFLFCFVGFYVMAGSVCLRNLSPKATSSEEERSSGGSQFFNEKRDGVIILEDVKEDNNKNEFDKTVIEDTKQDLFDDDGQGLSFDLLDKLNFDTDDTGSIVVYGGGALVALWLTSAVIGAIDSIPLFPKLLEVVGLAYTVWFTSRYLLFKQNRDELGAKIEELKGQIFGSEDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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