Glyma02g04540 - SoyBase

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Report for Sequence Feature Glyma02g04540

Feature Type:	gene_model
Chromosome:	Gm02
Start:	3701182
stop:	3702883
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g04540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24380	AT	Annotation by Michelle Graham. TAIR10: INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Oth	SoyBase	E_val: 2.00E-85	ISS
GO:0009257	GO-bp	Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process	SoyBase	N/A	ISS
GO:0009396	GO-bp	Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009693	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
KOG2551	KOG	Phospholipase/carboxyhydrolase	JGI		ISS
PTHR22778	Panther	OVARIAN CANCER GENE-2 PROTEIN-RELATED	JGI		ISS
PF03959	PFAM	Serine hydrolase (FSH1)	JGI		ISS
UniRef100_G7JXR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ovarian cancer-associated gene 2 protein-like protein n=1 Tax=Medicago truncatula RepID=G7JXR7_MEDTR	SoyBase	E_val: 2.00E-101	ISS
UniRef100_UPI0002337064	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337064 related cluster n=1 Tax=unknown RepID=UPI0002337064	SoyBase	E_val: 6.00E-134	ISS

Expression Patterns of Glyma02g04540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g04540 not represented in the dataset	Glyma02g04540 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g04540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g040000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g04540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g04540

Limit To All Plant Sequences

>Glyma02g04540.4   sequence type=transcript   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCACGAAAGCCAGAGAAAAGTCAGAATCCTGTGCCTCCATGGATTCAGGACCAGTGGTGAAATCCTCAAGCAATTAGTCTTAAGATGGCCTGAACCTGTCTTGCAAAAGCTGGAGCTTGTGTTCCTCGATGGCCCGTTTCCTGCACAGGGAAGATCTGATGTTGAAGGCATTTTTGACCCTCCTTATTTTGAATGGTTCCAAGCCAATGAGGAGTTCACTGAGTATACCAACTTTGAAGAATGTTTAGCATACATTGAAGATTACATGCTAAAAAATGGTCCTTTTGATGGTTTCCTTAGCTTCTCTCAGGGAGCAATTTTAGCGGCTGCATTGCCAGGAATGCAAGCGCAGGGTGTGGCACTTGGGAAGGTGGACAAGATCAAGTTCCTGATTGAGATATCAGGAGCCAAGTTTGGAGAGAAGGATTTCATGAAGGCAGAGAGCATTGCTTTGTTGGAAGCATTCCAAGATCCTGTTGTGATTCACCACCCTAGAGGGCATACAGTCCCCAAACTTGATGATTATAGTCTTGAAATTATGGTCAATTTCATTGACACGATTCAGAGAATGATTTAG

>Glyma02g04540.5   sequence type=transcript   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCAATCTGCAGTCAAGATTGTGCGTTATGGAAGATCACGAAAGCCAGAGAAAAGTCAGAATCCTGTGCCTCCATGGATTCAGGACCAGTGGTGAAATCCTCAAGCAATTAGTCTTAAGATGGCCTGAACCTGTCTTGCAAAAGCTGGAGCTTGTGTTCCTCGATGGCCCGTTTCCTGCACAGGGAAGATCTGATGTTGAAGGCATTTTTGACCCTCCTTATTTTGAATGGTTCCAAGCCAATGAGGAGTTCACTGAGTATACCAACTTTGAAGAATGTTTAGCATACATTGAAGATTACATGCTAAAAAATGGTCCTTTTGATGGTTTCCTTAGCTTCTCTCAGGGAGCAATTTTAGCGGCTGCATTGCCAGGAATGCAAGCGCAGGTGGACAAGATCAAGTTCCTGATTGAGATATCAGGAGCCAAGTTTGGTGAAAACAGGTTTGGAATGCCTAAACTGGCTTCCAATGCATTTTCAAAACCAAATTGATTGCCCGTCCCTTCACTTTATAGGAGAGAAGGATTTCATGAAGGCAGAGAGCATTGCTTTGTTGGAAGCATTCCAAGATCCTGTTGTGATTCACCACCCTAGAGGGCATACAGTCCCCAAACTTGATGATTATAGTCTTGAAATTATGGTCAATTTCATTGACACGATTCAGAGAATGATTTAGGATGGCCATATCAAGTCTTGAATCTTATGGAGACCTTTTGTCATTGTATTTTGTGAAACTTTACTGAAGCCATGTATAATAAGAATATTTTCCATGTAATAAACTCGAATATATGAAGCCGGTGTCAATCAATTGTTAAATTTGGGTTCATT

Coding sequences of Glyma02g04540

Limit To All Plant Sequences

>Glyma02g04540.1   sequence type=CDS   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCACGAAAGCCAGAGAAAAGTCAGAATCCTGTGCCTCCATGGATTCAGGACCAGTGGTGAAATCCTCAAGCAATTAGTCTTAAGATGGCCTGAACCTGTCTTGCAAAAGCTGGAGCTTGTGTTCCTCGATGGCCCGTTTCCTGCACAGGGAAGATCTGATGTTGAAGGCATTTTTGACCCTCCTTATTTTGAATGGTTCCAAGCCAATGAGGAGTTCACTGAGTATACCAACTTTGAAGAATGTTTAGCATACATTGAAGATTACATGCTAAAAAATGGTCCTTTTGATGGTTTCCTTAGCTTCTCTCAGGGAGCAATTTTAGCGGCTGCATTGCCAGGAATGCAAGCGCAGGGTGTGGCACTTGGGAAGGTGGACAAGATCAAGTTCCTGATTGAGATATCAGGAGCCAAGTTTGGTGAAAACAGGTTTGGAATGCCTAAACTGGCTTCCAATGCATTTTCAAAACCAAATTGA

>Glyma02g04540.4   sequence type=CDS   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCACGAAAGCCAGAGAAAAGTCAGAATCCTGTGCCTCCATGGATTCAGGACCAGTGGTGAAATCCTCAAGCAATTAGTCTTAAGATGGCCTGAACCTGTCTTGCAAAAGCTGGAGCTTGTGTTCCTCGATGGCCCGTTTCCTGCACAGGGAAGATCTGATGTTGAAGGCATTTTTGACCCTCCTTATTTTGAATGGTTCCAAGCCAATGAGGAGTTCACTGAGTATACCAACTTTGAAGAATGTTTAGCATACATTGAAGATTACATGCTAAAAAATGGTCCTTTTGATGGTTTCCTTAGCTTCTCTCAGGGAGCAATTTTAGCGGCTGCATTGCCAGGAATGCAAGCGCAGGGTGTGGCACTTGGGAAGGTGGACAAGATCAAGTTCCTGATTGAGATATCAGGAGCCAAGTTTGGAGAGAAGGATTTCATGAAGGCAGAGAGCATTGCTTTGTTGGAAGCATTCCAAGATCCTGTTGTGATTCACCACCCTAGAGGGCATACAGTCCCCAAACTTGATGATTATAGTCTTGAAATTATGGTCAATTTCATTGACACGATTCAGAGAATGATTTAG

>Glyma02g04540.5   sequence type=CDS   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATCACGAAAGCCAGAGAAAAGTCAGAATCCTGTGCCTCCATGGATTCAGGACCAGTGGTGAAATCCTCAAGCAATTAGTCTTAAGATGGCCTGAACCTGTCTTGCAAAAGCTGGAGCTTGTGTTCCTCGATGGCCCGTTTCCTGCACAGGGAAGATCTGATGTTGAAGGCATTTTTGACCCTCCTTATTTTGAATGGTTCCAAGCCAATGAGGAGTTCACTGAGTATACCAACTTTGAAGAATGTTTAGCATACATTGAAGATTACATGCTAAAAAATGGTCCTTTTGATGGTTTCCTTAGCTTCTCTCAGGGAGCAATTTTAGCGGCTGCATTGCCAGGAATGCAAGCGCAGGTGGACAAGATCAAGTTCCTGATTGAGATATCAGGAGCCAAGTTTGGTGAAAACAGGTTTGGAATGCCTAAACTGGCTTCCAATGCATTTTCAAAACCAAATTGA

Predicted protein sequences of Glyma02g04540

Limit To All Plant Sequences

>Glyma02g04540.1   sequence type=predicted peptide   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHESQRKVRILCLHGFRTSGEILKQLVLRWPEPVLQKLELVFLDGPFPAQGRSDVEGIFDPPYFEWFQANEEFTEYTNFEECLAYIEDYMLKNGPFDGFLSFSQGAILAAALPGMQAQGVALGKVDKIKFLIEISGAKFGENRFGMPKLASNAFSKPN*

>Glyma02g04540.4   sequence type=predicted peptide   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHESQRKVRILCLHGFRTSGEILKQLVLRWPEPVLQKLELVFLDGPFPAQGRSDVEGIFDPPYFEWFQANEEFTEYTNFEECLAYIEDYMLKNGPFDGFLSFSQGAILAAALPGMQAQGVALGKVDKIKFLIEISGAKFGEKDFMKAESIALLEAFQDPVVIHHPRGHTVPKLDDYSLEIMVNFIDTIQRMI*

>Glyma02g04540.5   sequence type=predicted peptide   gene model=Glyma02g04540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDHESQRKVRILCLHGFRTSGEILKQLVLRWPEPVLQKLELVFLDGPFPAQGRSDVEGIFDPPYFEWFQANEEFTEYTNFEECLAYIEDYMLKNGPFDGFLSFSQGAILAAALPGMQAQVDKIKFLIEISGAKFGENRFGMPKLASNAFSKPN*

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