SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70590 | AT | Annotation by Michelle Graham. TAIR10: F-box family protein | chr1:26618403-26620159 FORWARD LENGTH=351 | SoyBase | E_val: 4.00E-132 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| PTHR11102 | Panther | SEL-1-LIKE PROTEINS | JGI | ISS | |
| PTHR11102:SF7 | Panther | gb def: unknown [pasteurella multocida] | JGI | ISS | |
| PF08238 | PFAM | Sel1 repeat | JGI | ISS | |
| UniRef100_D7KY47 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KY47_ARALL | SoyBase | E_val: 9.00E-134 | ISS |
| UniRef100_I1JC67 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JC67_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g04340 not represented in the dataset |
Glyma02g04340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g03220 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g038300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g04340.2 sequence type=transcript gene model=Glyma02g04340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATGATATAATGCAAGATGAAACGCGTGAAGAAGCGAATTACCTATACCACCCATTCACCGACTCTCTCTCTCTCTTTCCTTCTATCTGACACACAGAGTCGCCGACTTACTCTGCACTCTGCAACAGATGAAGCACCCAACATGGCCTCGCACCTCCTCTTCTCCCTTCTCCTCTCTTCCTTTCTCCAACCGTTCCGAATTCTTCACCACGCGCCTCTGCGCGCGTCCTCCGCTGCCGTCCCCTCCCGGCGCCGGCGACTTCTCGGCGCTCCCCTACGACGTGCTGGCGAAGATCGCCGCCTCCTTCGACGACCCCAACCTCCGCGCGGCGTCACTGGTGTGCCGCGCCTGGTGCGAGGCGCTGCGGCCGCTGCGGGAGGCCATGGCGCTGCTCCTCTGGGGGAAGCGCTTCAAGCACGGCCACCGTGGCGTCGGCCCCAACCCCGATAGGGCCCTCGACTCCTTCATCAAAGCCGCCGCGCGCGGCTCCGCCCTCGCCATGGTCGACGCCGGCCTCATCTACTGGGAGCGAGGCGAGAAGCCCAAGGCCATGGAGTTTTATCATAAGGCTGCGGAACTCGGAAACCCTTCTGCGCAGTGCAATTTGGGACTTTCCTATCTCCAAGCTGAACCTCCGAACACTGAGCTAGCTGTCAAATGGTTACATAAAGCTTCTGTTTGTGGGAATGTTCGTGCCCAGTACCAGCTTGCGCTTTGTCTGCATCGCGGTGGTGGGAGGGTCCGTAGCAATCTGAAAGAAGCTGTTGGTGCTCTATCCATTTCCTCTCCTCTTCTAATTATGAGTGAAGCAGTGAACCTTTTCTTTCAGAGGGGCTAAATGGTATATGAAAGCTGCAGAGGGTGGGTATGTCCGTGCCATGTACAATATCTCCTTGTGCTTCTCCTTTGGGGAAGGACTGACACGTAATCATCAACTAGCAAGAAAATGGATGAAGCGGGCTGCGGATCGTGGGCATAGTAAAGCTCAATTTGAGCATGGACTTGCTCTCTTTTCTGAGGGAGACATGATGAAGGCTGTGGTTTACTTGGAACTTGCTACTCGTGCTGGTGAAAAAGGTGCTGCTCATGTCAAGAATGCAGTTCTTCATCGGCTTTCATCAGCTTCACGTGATCACGCCATGCATCTAGCTAACAGTTGGCGTGCATTGCCATCAAGTTGAGCCAATCCTTATGTTGGTTTGTGATGAAGAAGTTGCATGACCTTGGTCGGTGGCATCAGAAGAGTGAAGTCAACTAAGAATACCTAAGCATAGAAACAAGGAAAGCAGGAGGAGCTGACTAAGAAACTACCTTTGCCTGCTAATCCTGACTATAGTGGTTTTCCTATAATATAAAGAAAACTAGTTGGTGGGCGTTTGTAAAAGCTAGTTGAATTTGAATCCTTTGTAAAACGCCCCATTGACTAGTTGCAAGTTCCTCTCAAGTTCCCCTTACAACTGTGCAGGGTAGAATGTGGTGGGCGTTTTTTGTCATAAGTGGCATCTAGAAAATTGCAACGTCATATACTCATATTACTCCATATTATATAGGATGAATGACTGATTAAGTAGTACCAAGCTGTGTCTATGGCTTTACAAGAGAACCAGTTTAACCTCTAGTGTGGTTCATATCTAATCTACTATTAACTAATCATGTCCATTTTTTTTTTTACATAACGTTTAGTATATCAATATTCTCCCAATTATACATGAATAGGTTTACCCTTCCCTAGCGTGAAAATTTCATATATACTTTGGTTAATCACGAGTTTCGTGTATGCAGGTGCTTCACGGGTTAAGAAGGGTGTGTCAAGAAAAATACACGCTTCTGTTTGCCCATCAGATGGCATTTGCTTACTCAACGGGACAAAAATAGATAGATGAGGATGGAATATCTTGAATGTGGTATTCATATTCTCAATTGATTCATGAAGTGAAATAAATAGCATGAGATTGCAAGCAGAGCTAGTGCTTTGTCATGCGGAATCAAATAGGATCACAATGGGCATAAAAGACCATTCAAAATTTATATCAAACCTGTGTTTTTCATGAACGAAAAGGGGACAAGTAGAATCTCCACTTCCATGAATTCCAAGGAATGTCAACGGCCCGGCATATCTGAACACTATTTTGTAACGTAGCAAACCAGTTTTAAAAACGTTT
>Glyma02g04340.1 sequence type=CDS gene model=Glyma02g04340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCACCCAACATGGCCTCGCACCTCCTCTTCTCCCTTCTCCTCTCTTCCTTTCTCCAACCGTTCCGAATTCTTCACCACGCGCCTCTGCGCGCGTCCTCCGCTGCCGTCCCCTCCCGGCGCCGGCGACTTCTCGGCGCTCCCCTACGACGTGCTGGCGAAGATCGCCGCCTCCTTCGACGACCCCAACCTCCGCGCGGCGTCACTGGTGTGCCGCGCCTGGTGCGAGGCGCTGCGGCCGCTGCGGGAGGCCATGGCGCTGCTCCTCTGGGGGAAGCGCTTCAAGCACGGCCACCGTGGCGTCGGCCCCAACCCCGATAGGGCCCTCGACTCCTTCATCAAAGCCGCCGCGCGCGGCTCCGCCCTCGCCATGGTCGACGCCGGCCTCATCTACTGGGAGCGAGGCGAGAAGCCCAAGGCCATGGAGTTTTATCATAAGGCTGCGGAACTCGGAAACCCTTCTGCGCAGTGCAATTTGGGACTTTCCTATCTCCAAGCTGAACCTCCGAACACTGAGCTAGCTGTCAAATGGTTACATAAAGCTTCTGTTTGTGGGAATGTTCGTGCCCAGTACCAGCTTGCGCTTTGTCTGCATCGCGGTGGTGGGAGGGTCCGTAGCAATCTGAAAGAAGCTGCTAAATGGTATATGAAAGCTGCAGAGGGTGGGTATGTCCGTGCCATGTACAATATCTCCTTGTGCTTCTCCTTTGGGGAAGGACTGACACGTAATCATCAACTAGCAAGAAAATGGATGAAGCGGGCTGCGGATCGTGGGCATAGTAAAGCTCAATTTGAGCATGGACTTGCTCTCTTTTCTGAGGGAGACATGATGAAGGCTGTGGTTTACTTGGAACTTGCTACTCGTGCTGGTGAAAAAGGTGCTGCTCATGTCAAGAATGCAGTTCTTCATCGGCTTTCATCAGCTTCACGTGATCACGCCATGCATCTAGCTAACAGTTGGCGTGCATTGCCATCAAGTTGA >Glyma02g04340.2 sequence type=CDS gene model=Glyma02g04340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGCACCCAACATGGCCTCGCACCTCCTCTTCTCCCTTCTCCTCTCTTCCTTTCTCCAACCGTTCCGAATTCTTCACCACGCGCCTCTGCGCGCGTCCTCCGCTGCCGTCCCCTCCCGGCGCCGGCGACTTCTCGGCGCTCCCCTACGACGTGCTGGCGAAGATCGCCGCCTCCTTCGACGACCCCAACCTCCGCGCGGCGTCACTGGTGTGCCGCGCCTGGTGCGAGGCGCTGCGGCCGCTGCGGGAGGCCATGGCGCTGCTCCTCTGGGGGAAGCGCTTCAAGCACGGCCACCGTGGCGTCGGCCCCAACCCCGATAGGGCCCTCGACTCCTTCATCAAAGCCGCCGCGCGCGGCTCCGCCCTCGCCATGGTCGACGCCGGCCTCATCTACTGGGAGCGAGGCGAGAAGCCCAAGGCCATGGAGTTTTATCATAAGGCTGCGGAACTCGGAAACCCTTCTGCGCAGTGCAATTTGGGACTTTCCTATCTCCAAGCTGAACCTCCGAACACTGAGCTAGCTGTCAAATGGTTACATAAAGCTTCTGTTTGTGGGAATGTTCGTGCCCAGTACCAGCTTGCGCTTTGTCTGCATCGCGGTGGTGGGAGGGTCCGTAGCAATCTGAAAGAAGCTGTTGGTGCTCTATCCATTTCCTCTCCTCTTCTAATTATGAGTGAAGCAGTGAACCTTTTCTTTCAGAGGGGCTAA
>Glyma02g04340.1 sequence type=predicted peptide gene model=Glyma02g04340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHPTWPRTSSSPFSSLPFSNRSEFFTTRLCARPPLPSPPGAGDFSALPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMALLLWGKRFKHGHRGVGPNPDRALDSFIKAAARGSALAMVDAGLIYWERGEKPKAMEFYHKAAELGNPSAQCNLGLSYLQAEPPNTELAVKWLHKASVCGNVRAQYQLALCLHRGGGRVRSNLKEAAKWYMKAAEGGYVRAMYNISLCFSFGEGLTRNHQLARKWMKRAADRGHSKAQFEHGLALFSEGDMMKAVVYLELATRAGEKGAAHVKNAVLHRLSSASRDHAMHLANSWRALPSS* >Glyma02g04340.2 sequence type=predicted peptide gene model=Glyma02g04340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKHPTWPRTSSSPFSSLPFSNRSEFFTTRLCARPPLPSPPGAGDFSALPYDVLAKIAASFDDPNLRAASLVCRAWCEALRPLREAMALLLWGKRFKHGHRGVGPNPDRALDSFIKAAARGSALAMVDAGLIYWERGEKPKAMEFYHKAAELGNPSAQCNLGLSYLQAEPPNTELAVKWLHKASVCGNVRAQYQLALCLHRGGGRVRSNLKEAVGALSISSPLLIMSEAVNLFFQRG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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