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Report for Sequence Feature Glyma02g04300

Feature Type:gene_model
Chromosome:Gm02
Start:3482787
stop:3485655
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g04300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G24095AT Annotation by Michelle Graham. TAIR10: Putative thiol-disulphide oxidoreductase DCC | chr1:8523345-8524690 FORWARD LENGTH=213 SoyBaseE_val: 8.00E-71ISS
PTHR10178Panther GAG/POL/ENV POLYPROTEIN JGI ISS
PTHR10178:SF61Panther RNASE H DOMAIN-CONTAINING PROTEIN JGI ISS
PF04134PFAM Protein of unknown function, DUF393 JGI ISS
UniRef100_C6SYY6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYY6_SOYBN SoyBaseE_val: 7.00E-136ISS
UniRef100_G7K2V8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein n=1 Tax=Medicago truncatula RepID=G7K2V8_MEDTR SoyBaseE_val: 1.00E-82ISS

Expression Patterns of Glyma02g04300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g04300 not represented in the dataset
Glyma02g04300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g04300 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g037900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g04300
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g04300
>Glyma02g04300.1   sequence type=CDS   gene model=Glyma02g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACATTAGGATGAAGAGAGGACTCGCAAGCTTAATCAAGACGCCAATAGAGAGAGGGTGGGGTAATGGGTTGCGCTGTTTCAACTCTTCTTCTTCGGTGTTGAAGGGCGTCACCACCCCCACTCTGCTTCAGCCCAGAGTGCTTCTCTACGACGCCGTTTCTCACCTCTGCCACCGAGGAGTAAAATGGGTAATCAGAGCAGACAAGGACAGAAAGATCAAATTTTGTTGCGTTCAGTCTGATACTGCTGAGCTCTATCTGAGAGCTTGTGGTCTTGAACGAGAGGATGTCTTGCACCGCATTCTGTTTGTTGAAGGCCTGAATGTTTACTCTCAGGGATCCACTGCTGCATTGCGAGTACTGTCGCACTTGCCACTACCTTACTCTGCTTTTAGTGCGCTCTGCGTGATTCCATCTCCACTCAGAGATGGTGTCTACAATTATGTAGCAAAACGAAGGTACGAATGGTTTGGTAAGGCTGACGATTATTTGGTTTTGCAAGAGAAAGAGCTGCTTGAGCGTTTCATAGATAGGGAAGAACTGATGAGTCGAGATAAGGATTCCTAG
Predicted protein sequences of Glyma02g04300
>Glyma02g04300.1   sequence type=predicted peptide   gene model=Glyma02g04300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDIRMKRGLASLIKTPIERGWGNGLRCFNSSSSVLKGVTTPTLLQPRVLLYDAVSHLCHRGVKWVIRADKDRKIKFCCVQSDTAELYLRACGLEREDVLHRILFVEGLNVYSQGSTAALRVLSHLPLPYSAFSALCVIPSPLRDGVYNYVAKRRYEWFGKADDYLVLQEKELLERFIDREELMSRDKDS*






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