Report for Sequence Feature Glyma02g04130
Feature Type: gene_model
Chromosome: Gm02
Start: 3312805
stop: 3314606
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g04130
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G23390 AT
Annotation by Michelle Graham. TAIR10: Kelch repeat-containing F-box family protein | chr1:8309449-8310633 REVERSE LENGTH=394
SoyBase E_val: 6.00E-82 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_G7K074 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein n=1 Tax=Medicago truncatula RepID=G7K074_MEDTR
SoyBase E_val: 7.00E-168 ISS
UniRef100_I1JC45 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JC45_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g04130
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g04130
Paralog Evidence Comments
Glyma01g03500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g04130 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g036400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g04130
Coding sequences of Glyma02g04130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g04130.1 sequence type=CDS gene model=Glyma02g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAACAGAAGAAGCACCCATCCACGGCGATATCTTAGAGGCCATATTCTCGCACGTGCCACTCATCCACCTTGTGCCCGCCTCTCACGTGTCGAATTCCTGGAAGCGTGCGGTGTCCTCCTCCCTCGCCCACGTCAGACCCATCAAGCCGTGGTTAATTGTCCTCACCCAGAGCCTCCGCGCCTCGCACGTGACAACCCTCCACGCCTACGACCCCCGCTCGCACGTGTGGCTCCAAATCAATAACTCAAAATACTGTCACACCTCCCCCGTGCGATCCTCACACTCGACGCTCTTCTACACACTCACCCCATCCGAGTTCGCCTTCTCCCTCGACGCGCTGCACCTCAACTGGCACCACGCGCCTTCCCCGCGCGTGTGGCGCACCGACCCCGTGGTGGCGCGCGTGGGGACGTGCGTGGTGGTGGCCGGCGGTGCGTGCGAGTTCGAGGACGATCCGCTCGCGGTGGAGATGTACGACTTAAAGAGCCAATCCTGGGAGGCGTGTCCCTCCATGCCGGCGCTGCTGAAAGGTTCGACGGCGTCGTCGTGGCTGTCGGTGGCGATCGCCGGAGAAATCATGCACGTGACCGAGAAACACTCCGGCGTGACGTACTCGTTCGACACTGTTTCGAAAACGTGGAAAGGACCGTTTAATTTGAGGCCTCATGAGAGTGTTTTTCACTGCGTCACCGGAACCCTAGGAGAGAGGTTGATGGTGGCGGGGGTGGTGTGGGAAGTTGGGAACGTGAAAGGCGTGAAGCTGTGGGAGGTTCGGGTGGGTTCGGGGATGGAGGAAGTGGGTGAGATGCCGAAGGAGATGGTTCGGAAGTTATTCAGTGGTTCGGAGTTAGATTCGGTGGAGGTGACGTGGATTGGGGATTTTGTTTACGTAAGGAACACTTTCGAACCGGAGGAGCTGGTGTTGTGCGAAGTGTTGAATCATTTGAATGGAGTTGGGTGCGAGTGGCGGAGTGTACGGAACGCCGCCGTTAGATGTGGCGCGAGGATGCTGTTTTGCGGTGGCGATGTGTGCCTGGAGGATCTGCAGCGGGCGGTGATGTCGGAGAATCCCACATTTTCCATAGAACAAGTGTGA
Predicted protein sequences of Glyma02g04130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g04130.1 sequence type=predicted peptide gene model=Glyma02g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MATEEAPIHGDILEAIFSHVPLIHLVPASHVSNSWKRAVSSSLAHVRPIKPWLIVLTQSLRASHVTTLHAYDPRSHVWLQINNSKYCHTSPVRSSHSTLFYTLTPSEFAFSLDALHLNWHHAPSPRVWRTDPVVARVGTCVVVAGGACEFEDDPLAVEMYDLKSQSWEACPSMPALLKGSTASSWLSVAIAGEIMHVTEKHSGVTYSFDTVSKTWKGPFNLRPHESVFHCVTGTLGERLMVAGVVWEVGNVKGVKLWEVRVGSGMEEVGEMPKEMVRKLFSGSELDSVEVTWIGDFVYVRNTFEPEELVLCEVLNHLNGVGCEWRSVRNAAVRCGARMLFCGGDVCLEDLQRAVMSENPTFSIEQV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
