SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15380 | AT | Annotation by Michelle Graham. TAIR10: domains rearranged methylase 1 | chr5:4991347-4994826 FORWARD LENGTH=624 | SoyBase | E_val: 5.00E-175 | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003886 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA (cytosine-5-)-methyltransferase activity | SoyBase | N/A | ISS |
| PTHR23068 | Panther | DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED | JGI | ISS | |
| PF00145 | PFAM | C-5 cytosine-specific DNA methylase | JGI | ISS | |
| UniRef100_G1CQN7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Domain rearranged methyltransferase (Fragment) n=2 Tax=Vitis amurensis RepID=G1CQN7_9ROSI | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336E45 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E45 related cluster n=1 Tax=unknown RepID=UPI0002336E45 | SoyBase | E_val: 0 | ISS |
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Glyma02g04060 not represented in the dataset |
Glyma02g04060 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g035700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g04060.3 sequence type=transcript gene model=Glyma02g04060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTTTCTCTATCTCTGTTCCTTAAAAGCAAACTCATACTTCACGTTCTTCTGTTTCAACTCTCAATTAACAAACCCAAAACATGTTTCTCCTTTGATCTTGTTCTTCTCTAGTACGCCTCATGCAGTTCCACAACTACGTGTGCTACGAACATAGGAAACTTGTTTGTGGAGTCGAGAGTTCTTACTTATCTGCTAAGTCATGGGTTCAGAAGGTGATGATAGCTCTCCCAGTGACTATGATTGGAACACTGATGATGAGCTTGAGGTGTTTGGAATACCTCCCTCGGATCCAACCATTTCTAGTCAAGAGAGCTGTGAAGATAGTGTGGGGGAGAGTAGTGCAAGTTGCTCGAGCGCTAAACATTCCAAGCTGATTCATCTCTTCGTGGGAATGGGATTTTCCAGAGAGACAGTGATCAAAGCAATTGATGAAAATGGAAGAGATAATGAGGAGGACATTATGGAAGCTCTGCTAACACTTACTGCTGAAAAACCCTTAACAGTAGAGAAAGATGAGGCATTGTCCGTACTTGTCAATATGGGATACCCTTTTGAGGAGGCTTTGACAGCTATAGACAAATGTGGTCCTAAGGCCCATATCAGTGAGCTAGCGGATTTCATTAGTGCTTCTCAGTTAGAAAAGGGTCTTCACTCACCGCAAGAGTCACCTAACAATAAACATGATGCATCTGATTATACGCATGAAAAGCCCTGTCAACCAAGTGGTGAATATTATCTTCATACAAGTAAGAAAGTAAAACTTGGATTGGGTATATTTAATGAAGCCAGTCAAGTGATTTCAAGAAAGTTCCCAAGAGAAGTAGCAAATAAACCATACTTCTATTTTGAAAACGTGGCTCTTGCTCCTAAAGGAGTTTGGAAAACTATATCACGTTTTCTTTATGAGATTGAACCAGAATATGTTGATTCCAAATACTTTTGTGCTGCAACAAGAAAAAGAGGATATATCCATAATCTTCCCACCCACAACCGCTCCCCCCTGCTTCCTATCCCACCACTAACTATCCAAGAGGCTTTTCCTACAACTAAAAAATGGTGGCCTTCATGGGATAGAAGAACAAAGCTCAATTGCCTTCTAACTAGAGTAGCCCCTGGCCCAGTTACAGAGAGAATAAGGAAACTCCTTGAGAAATTTGGTGATGAACCTCCTCTACATGTCCAAGAAAATGTACTTGTAGAGATTAGAAAGTGGAACTTGGTGTGGGTTGGAAAAAACAAATTGGCACCTCTTGAACCTGATGAATATGAGATGTTGCTGGGATTCCCAAGGGATCACACCAGAGGTGGTGGAGTCACCCGGACAGAGAGATACAAGTCACTTGGAAATGCATTTCAGGTTAATACAGTTGCCTACCACCTTTCAGTGTTGAAGGGTCGTTTTCCAAATGGCATCAATGTCCTGTCTCTTTTTTCTGGCATCGGAGGTGCCGAGGTTGCTCTGCATCGACTTGGGATGATGCTTAAAAATGTGGTATCTGTGGAAATAGCTGAGGTGAACAGAAACATCATTCGCAGTTGGTGGGAACAGACTAACCAGAGGGGAAACTTAATTGAGGTTGAAGATGTACAGAAAGTCTCTTCAAATGAGCTGAGCCAGTGGATAACCAAGTTTGGTGGATTTGACCTCATCATTGGAGGCAGCCCCTGCAACAACATTTCTGGCAGTAATAGAGTTAGTAGACATGGACTAGAGGGAGAGCAATCTTCACTATTTTACGAATATTTTAGGATTGTTGAGGCAGTAATGGAAATACAGAGAGATGAGCTTCTGTGAAACAAAAAAAAGTACATCAGTGGATTTTGTTAATTCCCATTTTTGTATGGAACAACTAAAAATTATGTACACATAATAGGAGGAGGAGAATCCAATAGATCCAAGAAATGTAACAAAACATTTGTAATTTCGAATTTATCTTATATTGGTAATGTTTTTATGTTCTTTTTGTCACAC
>Glyma02g04060.2 sequence type=CDS gene model=Glyma02g04060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGTTCCACAACTACGTGGGTTCAGAAGGTGATGATAGCTCTCCCAGTGACTATGATTGGAACACTGATGATGAGCTTGAGGTGTTTGGAATACCTCCCTCGGATCCAACCATTTCTAGTCAAGAGAGCTGTGAAGATAGTGTGGGGGAGAGTAGTGCAAGTTGCTCGAGCGCTAAACATTCCAAGCTGATTCATCTCTTCGTGGGAATGGGATTTTCCAGAGAGACAGTGATCAAAGCAATTGATGAAAATGGAAGAGATAATGAGGAGGACATTATGGAAGCTCTGCTAACACTTACTGCTGAAAAACCCTTAACAGTAGAGAAAGATGAGGCATTGTCCGTACTTGTCAATATGGGATACCCTTTTGAGGAGGCTTTGACAGCTATAGACAAATGTGGTCCTAAGGCCCATATCAGTGAGCTAGCGGATTTCATTAGTGCTTCTCAGTTAGAAAAGGGTCTTCACTCACCGCAAGAGTCACCTAACAATAAACATGATGCATCTGATTATACGCATGAAAAGCCCTGTCAACCAAGTGGTGAATATTATCTTCATACAAGTAAGAAAGTAAAACTTGGATTGGGTATATTTAATGAAGCCAGTCAAGTGATTTCAAGAAAGTTCCCAAGAGAAGTAGCAAATAAACCATACTTCTATTTTGAAAACGTGGCTCTTGCTCCTAAAGGAGTTTGGAAAACTATATCACGTTTTCTTTATGAGATTGAACCAGAATATGTTGATTCCAAATACTTTTGTGCTGCAACAAGAAAAAGAGGATATATCCATAATCTTCCCACCCACAACCGCTCCCCCCTGCTTCCTATCCCACCACTAACTATCCAAGAGGCTTTTCCTACAACTAAAAAATGGTGGCCTTCATGGGATAGAAGAACAAAGCTCAATTGCCTTCTAACTAGAGTAGCCCCTGGCCCAGTTACAGAGAGAATAAGGAAACTCCTTGAGAAATTTGGTGATGAACCTCCTCTACATGTCCAAGAAAATGTACTTGTAGAGATTAGAAAGTGGAACTTGGTGTGGGTTGGAAAAAACAAATTGGCACCTCTTGAACCTGATGAATATGAGATGTTGCTGGGATTCCCAAGGGATCACACCAGAGGTGGTGGAGTCACCCGGACAGAGAGATACAAGTCACTTGGAAATGCATTTCAGGTTAATACAGTTGCCTACCACCTTTCAGTGTTGAAGGGTCGTTTTCCAAATGGCATCAATGTCCTGTCTCTTTTTTCTGGCATCGGAGGTGCCGAGGTTGCTCTGCATCGACTTGGGATGATGCTTAAAAATGTGGTATCTGTGGAAATAGCTGAGGTGAACAGAAACATCATTCGCAGTTGGTGGGAACAGACTAACCAGAGGGGAAACTTAATTGAGGTTGAAGATGTACAGAAAGTCTCTTCAAATGAGCTGAGCCAGTGGATAACCAAGTTTGGTGGATTTGACCTCATCATTGGAGGCAGCCCCTGCAACAACATTTCTGGCAGTAATAGAGTTAGTAGACATGGACTAGAGGGAGAGCAATCTTCACTATTTTACGAATATTTTAGGATTGTTGAGGCAGTAATGGAAATACAGAGAGATGAGCTTCTGTGA >Glyma02g04060.3 sequence type=CDS gene model=Glyma02g04060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCAGAAGGTGATGATAGCTCTCCCAGTGACTATGATTGGAACACTGATGATGAGCTTGAGGTGTTTGGAATACCTCCCTCGGATCCAACCATTTCTAGTCAAGAGAGCTGTGAAGATAGTGTGGGGGAGAGTAGTGCAAGTTGCTCGAGCGCTAAACATTCCAAGCTGATTCATCTCTTCGTGGGAATGGGATTTTCCAGAGAGACAGTGATCAAAGCAATTGATGAAAATGGAAGAGATAATGAGGAGGACATTATGGAAGCTCTGCTAACACTTACTGCTGAAAAACCCTTAACAGTAGAGAAAGATGAGGCATTGTCCGTACTTGTCAATATGGGATACCCTTTTGAGGAGGCTTTGACAGCTATAGACAAATGTGGTCCTAAGGCCCATATCAGTGAGCTAGCGGATTTCATTAGTGCTTCTCAGTTAGAAAAGGGTCTTCACTCACCGCAAGAGTCACCTAACAATAAACATGATGCATCTGATTATACGCATGAAAAGCCCTGTCAACCAAGTGGTGAATATTATCTTCATACAAGTAAGAAAGTAAAACTTGGATTGGGTATATTTAATGAAGCCAGTCAAGTGATTTCAAGAAAGTTCCCAAGAGAAGTAGCAAATAAACCATACTTCTATTTTGAAAACGTGGCTCTTGCTCCTAAAGGAGTTTGGAAAACTATATCACGTTTTCTTTATGAGATTGAACCAGAATATGTTGATTCCAAATACTTTTGTGCTGCAACAAGAAAAAGAGGATATATCCATAATCTTCCCACCCACAACCGCTCCCCCCTGCTTCCTATCCCACCACTAACTATCCAAGAGGCTTTTCCTACAACTAAAAAATGGTGGCCTTCATGGGATAGAAGAACAAAGCTCAATTGCCTTCTAACTAGAGTAGCCCCTGGCCCAGTTACAGAGAGAATAAGGAAACTCCTTGAGAAATTTGGTGATGAACCTCCTCTACATGTCCAAGAAAATGTACTTGTAGAGATTAGAAAGTGGAACTTGGTGTGGGTTGGAAAAAACAAATTGGCACCTCTTGAACCTGATGAATATGAGATGTTGCTGGGATTCCCAAGGGATCACACCAGAGGTGGTGGAGTCACCCGGACAGAGAGATACAAGTCACTTGGAAATGCATTTCAGGTTAATACAGTTGCCTACCACCTTTCAGTGTTGAAGGGTCGTTTTCCAAATGGCATCAATGTCCTGTCTCTTTTTTCTGGCATCGGAGGTGCCGAGGTTGCTCTGCATCGACTTGGGATGATGCTTAAAAATGTGGTATCTGTGGAAATAGCTGAGGTGAACAGAAACATCATTCGCAGTTGGTGGGAACAGACTAACCAGAGGGGAAACTTAATTGAGGTTGAAGATGTACAGAAAGTCTCTTCAAATGAGCTGAGCCAGTGGATAACCAAGTTTGGTGGATTTGACCTCATCATTGGAGGCAGCCCCTGCAACAACATTTCTGGCAGTAATAGAGTTAGTAGACATGGACTAGAGGGAGAGCAATCTTCACTATTTTACGAATATTTTAGGATTGTTGAGGCAGTAATGGAAATACAGAGAGATGAGCTTCTGTGA
>Glyma02g04060.2 sequence type=predicted peptide gene model=Glyma02g04060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQFHNYVGSEGDDSSPSDYDWNTDDELEVFGIPPSDPTISSQESCEDSVGESSASCSSAKHSKLIHLFVGMGFSRETVIKAIDENGRDNEEDIMEALLTLTAEKPLTVEKDEALSVLVNMGYPFEEALTAIDKCGPKAHISELADFISASQLEKGLHSPQESPNNKHDASDYTHEKPCQPSGEYYLHTSKKVKLGLGIFNEASQVISRKFPREVANKPYFYFENVALAPKGVWKTISRFLYEIEPEYVDSKYFCAATRKRGYIHNLPTHNRSPLLPIPPLTIQEAFPTTKKWWPSWDRRTKLNCLLTRVAPGPVTERIRKLLEKFGDEPPLHVQENVLVEIRKWNLVWVGKNKLAPLEPDEYEMLLGFPRDHTRGGGVTRTERYKSLGNAFQVNTVAYHLSVLKGRFPNGINVLSLFSGIGGAEVALHRLGMMLKNVVSVEIAEVNRNIIRSWWEQTNQRGNLIEVEDVQKVSSNELSQWITKFGGFDLIIGGSPCNNISGSNRVSRHGLEGEQSSLFYEYFRIVEAVMEIQRDELL* >Glyma02g04060.3 sequence type=predicted peptide gene model=Glyma02g04060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSEGDDSSPSDYDWNTDDELEVFGIPPSDPTISSQESCEDSVGESSASCSSAKHSKLIHLFVGMGFSRETVIKAIDENGRDNEEDIMEALLTLTAEKPLTVEKDEALSVLVNMGYPFEEALTAIDKCGPKAHISELADFISASQLEKGLHSPQESPNNKHDASDYTHEKPCQPSGEYYLHTSKKVKLGLGIFNEASQVISRKFPREVANKPYFYFENVALAPKGVWKTISRFLYEIEPEYVDSKYFCAATRKRGYIHNLPTHNRSPLLPIPPLTIQEAFPTTKKWWPSWDRRTKLNCLLTRVAPGPVTERIRKLLEKFGDEPPLHVQENVLVEIRKWNLVWVGKNKLAPLEPDEYEMLLGFPRDHTRGGGVTRTERYKSLGNAFQVNTVAYHLSVLKGRFPNGINVLSLFSGIGGAEVALHRLGMMLKNVVSVEIAEVNRNIIRSWWEQTNQRGNLIEVEDVQKVSSNELSQWITKFGGFDLIIGGSPCNNISGSNRVSRHGLEGEQSSLFYEYFRIVEAVMEIQRDELL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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