Glyma02g03851 - SoyBase

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Report for Sequence Feature Glyma02g03851

Feature Type:	gene_model
Chromosome:	Gm02
Start:	3081562
stop:	3083844
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g03851

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG4214	KOG	Myotrophin and similar proteins	JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_D3J163	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin repeat domain-containing protein n=2 Tax=Medicago truncatula RepID=D3J163_MEDTR	SoyBase	E_val: 5.00E-23	ISS
UniRef100_UPI0002337584	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337584 related cluster n=1 Tax=unknown RepID=UPI0002337584	SoyBase	E_val: 1.00E-91	ISS

Expression Patterns of Glyma02g03851

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g03851 not represented in the dataset	Glyma02g03851 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g03851 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g033700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g03851

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g03851

Limit To All Plant Sequences

>Glyma02g03851.1   sequence type=CDS   gene model=Glyma02g03851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGCCATCGGGAAGGCCACCTCCGTCGACATCTGCCGCTTCTTCTCCAAACCTGGCCCCTACGTGTCCTGCGACACGATGGAGTTTCTATTAGCGCGCTACGACGGCGAGCTAGACGTGGATGCGGTGGACTCCGAGGGGAGGACGACGATCCACGTGGTGGTGAGGGAGGGGCACACGAGGGTTATCCGGTTCTGCGTCACGATGGGGGGAAACCCTAATCGCGTGGATTCGAAGGGGTGGACCCCACTCTACTACGCAGCGTGGAAGGGGCACGTGAAGGCTGCGGAGTGTTTGTTGGAATGCTCCAACGTGAAGTGCGTGAGGGACAGGGAAGGGAGAAGAACATTTTCTGTTGTCGCGGAGAGTGAGCACGAACATTCTGCTGGTGCTCCAGTCTTTTTATGTTTTTTGCTCTTTCATTGA

Predicted protein sequences of Glyma02g03851

Limit To All Plant Sequences

>Glyma02g03851.1   sequence type=predicted peptide   gene model=Glyma02g03851   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAIGKATSVDICRFFSKPGPYVSCDTMEFLLARYDGELDVDAVDSEGRTTIHVVVREGHTRVIRFCVTMGGNPNRVDSKGWTPLYYAAWKGHVKAAECLLECSNVKCVRDREGRRTFSVVAESEHEHSAGAPVFLCFLLFH*

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