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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23870 | AT | Annotation by Michelle Graham. TAIR10: trehalose-phosphatase/synthase 9 | chr1:8432695-8435506 FORWARD LENGTH=867 | SoyBase | E_val: 0 | ISS |
| GO:0005992 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus | SoyBase | N/A | ISS |
| GO:0009750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004805 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| KOG1050 | KOG | Trehalose-6-phosphate synthase component TPS1 and related subunits | JGI | ISS | |
| PTHR10788 | Panther | TREHALOSE-6-PHOSPHATE SYNTHASE | JGI | ISS | |
| PF00982 | PFAM | Glycosyltransferase family 20 | JGI | ISS | |
| PF02358 | PFAM | Trehalose-phosphatase | JGI | ISS | |
| UniRef100_B9S4L7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9S4L7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1J5A8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5A8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g03820 not represented in the dataset |
Glyma02g03820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g03870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g033500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g03820.1 sequence type=CDS gene model=Glyma02g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCAAGATCATATGTTAATCTACTAGACTTAGCTGGAGGTTTACTGGATATTCCTCACATGCCAAGAACTATTCCAAGGATTATGACAGTTCCTGGAGTTATTTCTGACCTGGATGTTTATGGTAGATATGATGGGGATTCTGATGTTAGCTCTTCTGGTTATCGGGAGCGGAAAATCCTTGTGGCAAACATGTTGCCATTGCAGGCCAAAAGAGATATTGAAACTGGTAAATGGTGTTTCAGTTTGGATGAGGATTCTATTCTGTTGCAATTAAAAGATGGTTTCTCTTCTGACACTGAGGTGATCTATGTGGGATCCCTCAAGGTTGAAATAGATGCCCATGAGCAGGAACAAGTTGCTCAGAAATTACTGGAGGACTTTAATTGCATACCTACCTTTCTACCCCATGATGTCCAGAAGAAGTTTTATCATGGCTTTTGCAAACAGCAGCTTTGGCCTCTCTTTCATTACATGCTACCTATGTTCCCTGATCATGGTGATCGGTTTGACCGCTTGTTGTGGCAGGCTTATGTCTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAATAATCAATCCTGATGACGATTTTGTTTGGGTTCAAGACTATCACTTGATGGTCTTGCCTACATTTTTGAGGAAGCGGTATAATCGCGTTAAGCTTGGATTCTTTCTTCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCGGTAAGGGATGAAATTCTGAGGGGTTTGTTGAATTCTGATTTAATTGGTTTCCATACATTTGATTATGCTCGCCACTTCCTCTCTTGTTGCAAAAGAATGCTAGGTCTTGACTATGAATCTAAACGAGGACATATAGGACTTGATTACTTTGGCCGTACTATATTTATCAAAATTCTGCCTGTAGGCATTCATATGGGTAGGCTTGAATCTGTATTAAATCTTCAATCTACATCAGCTAAATTGAAAGAGATTCAGGAAGAGTTCAAGGGTAGGAAGGTAATTCTTGGTGTTGATGACATGGACATCTTTAAGGGCATCAGTCTGAAGCTTCTAGCTGTTGAGCAGCTGCTGCAGCAGAATCGTGATTTGAAGGGCAAAGTTGTCCTAGTACAGATTGTGAATCCTGCTAGGAGTTCAGGCAAGGATGTTCAGGAAGCAAAGAAGGAAACATATTTAATTGCCCAGAGGATTAATGATACTTATGGCTCAATCAATTATCGGCCTGTAATTCTCATTGATCGTCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCCGAATGTTGCATTGTCAATGCTGTGAGGGATGGTATGAACTTAGTCCCATACAAATATATTGTTTGTCGACAAGGAACTGCACAGATGGATAAAGCTTTGGCTAGAAAAAGTGATTCTCCTCGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCTCCTTCTCTAAGTGGAGCAATCAGGGTCAATCCATGGAACATAGATGCTGTCGCTGATGCTCTGTATTCAGCTGTTACTATGAATGATTCAGAGAAGCAATTGAGGCATGAGAAACACTACAGGTACATCAGTTCTCATGATGTGGCATATTGGGCACGCAGCTTTATGCAGGATTTGGAGAGAGCATGCAAAGATCATTACACCAAAAGATGCTGGGGAATGGGTTTGGGCCTAGGGTTTAGAGTTGTTTCTCTTTCTCCTGGTTTTAGAAAATTGTCTGTTGATCACATTGTTTCAGCATACAAAAGAACTGGTAGAAGAGCCATATTTCTTGATTATGATGGTACTATCGTACCAAAATCTTCTATAAATAAGACCCCCAGCCCTGAAGTCATATCCATGCTAAATGATATGTGCAATGATCCTAAAAATACTGTGTTCATTGTGAGTGGAAGGGGAAGAGATTCTTTAAGTGATTGGTTTACTTCATGCAAAATGATTGGACTTGCAGCCGAACACGGATACTTTCTAAGGTGGAGTAAAGATTCTGAATGGGAAACCAGTCCCTTGTCTCCTGATCTTGATTGGAAAAAGATTGTGGAACCTGTCATGCAGTTGTATACAGAGGCAACTGATGGATCTAATATTGAAACTAAGGAAAGTGCTTTGGTCTGGCATCATCAAGATGCAGACCCTGATTTTGGCTCATGCCAAGCCAAAGAATTGTTAAATCATCTGGAAAGTGTCCTTGCTAATGAACCTGCAGTTGTTATCAGGGGCCAGCATATTGTTGAAGTCAAGCCACAGGGATTAAACAAGGGATTGGTGGCTGAAAAGGTTCTTTCCACTATGGTTAATGATGGCAATCCACCAGATTTTGTGATGTGTGTGGGAGATGACATTTCTGATGAAGACATGTTTGAGAGCATACTAAGGACAGTTTCATGCCCTTCATTGCCAGTAGTTCCTGAGATCTTTGCCTGCACTGTAGGTCAGAAACCTAGCAAGGCCAAATATTATCTTGATGATCCTGCTGATGTCTTGAAGTTGCTTCAAGGCCTTGGTGCTTCATCTAAGCCAAAGTCAAGGCATCTAGCACAATTCCAAGTTTCTTTTGAGAGCACGGTTTGA
>Glyma02g03820.1 sequence type=predicted peptide gene model=Glyma02g03820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASRSYVNLLDLAGGLLDIPHMPRTIPRIMTVPGVISDLDVYGRYDGDSDVSSSGYRERKILVANMLPLQAKRDIETGKWCFSLDEDSILLQLKDGFSSDTEVIYVGSLKVEIDAHEQEQVAQKLLEDFNCIPTFLPHDVQKKFYHGFCKQQLWPLFHYMLPMFPDHGDRFDRLLWQAYVSANKIFADKVMEIINPDDDFVWVQDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCKRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMGRLESVLNLQSTSAKLKEIQEEFKGRKVILGVDDMDIFKGISLKLLAVEQLLQQNRDLKGKVVLVQIVNPARSSGKDVQEAKKETYLIAQRINDTYGSINYRPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTAQMDKALARKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADALYSAVTMNDSEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYTKRCWGMGLGLGFRVVSLSPGFRKLSVDHIVSAYKRTGRRAIFLDYDGTIVPKSSINKTPSPEVISMLNDMCNDPKNTVFIVSGRGRDSLSDWFTSCKMIGLAAEHGYFLRWSKDSEWETSPLSPDLDWKKIVEPVMQLYTEATDGSNIETKESALVWHHQDADPDFGSCQAKELLNHLESVLANEPAVVIRGQHIVEVKPQGLNKGLVAEKVLSTMVNDGNPPDFVMCVGDDISDEDMFESILRTVSCPSLPVVPEIFACTVGQKPSKAKYYLDDPADVLKLLQGLGASSKPKSRHLAQFQVSFESTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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