SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70280 | AT | Annotation by Michelle Graham. TAIR10: NHL domain-containing protein | chr1:26466086-26468471 REVERSE LENGTH=509 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR13833 | Panther | ZINC FINGER PROTEIN TRANSCRIPTION FACTOR | JGI | ISS | |
| PTHR13833:SF16 | Panther | NHL REPEAT-CONTAINING PROTEIN | JGI | ISS | |
| PF01436 | PFAM | NHL repeat | JGI | ISS | |
| UniRef100_F4I5D7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NHL domain-containing protein n=2 Tax=Arabidopsis thaliana RepID=F4I5D7_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JC13 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JC13_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g03810 not represented in the dataset |
Glyma02g03810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g03880 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g033400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g03810.1 sequence type=CDS gene model=Glyma02g03810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGCTCCATTTTGCGTTCAGTTTCTCACTTTTGTTTCTACTCAGCAATGCCTCAGCTGCACCATCCACCACTTTACCCGCCAAGATTGTTAGTGGGTTTCTCTCAAATGCCGTTCCTGCGTTCACCAAATGGGTCTGGTCACTCAAAGCACCCACCAAAACCGCGATTGGTGCGAAGTCGATGATGAAGTTCGAGAGTGGGTACACTGTGGAAACTGTGTTTGATGGAAGCAAGCTTGGAATTGAGCCTTATGCAGTTGAGGTGTTGGCCAATGGGGAGCTTCTTATTCTGGATTCGGCTAATAGTAACATTTATAGGATTTCGTCCTCGCTTTCTTTGAATACCAGACCAAAGCTGGTGGCAGGATCTGCTGAAGGATATTCTGGACATGTTGATGGAAGGCTTAGGGAGGCCAGGATGAATCACCCAAAGGGGATAGCGGTTGATAACCGAGGAAATATCTATATTGCAGATATAATGAATATGGCAATTAGGAAAATTAGTGATTCAGGGGTCACAACAATTGCTGGCGGAAAATGGAGCCGGGGAGGGGGCCATATTGATGGTCCAAGTGAAGAAGCTAAATTTTCTAATGATTTTGATGTGGTTTATATTGGAAGTAGTTGTTCCCTACTTGTCATAGACAGGGGGAACCAAGCCATCAGGGAGATCCAACTACACTTTGATGATTGTGCTTATCAATACGAAAATGGACTTACACTTGGAATTGCAATGCTTGTTGGGGCTGGCTTCTTTGGCTATATGCTTGCATTATTACAGCATAGACTTGGTACAATTGTAGCATCTCAGGATCTTGAGGGTGCAGCAATGTCTGGCATTTCACCAAGTCCATATCAAAAGCCCTTGAAGTCTGTCAGGCCTCCTTTAATTCCATCAGAAGATGAGTCGGATAAGCAAGAAGAAAGTTTCATTCGATCCATTGGGAAGCTTCTTACCAATGCTGGGGCATCAGTTGTGGAAATAATGGGAGCGTTATTTCCTGGTTTCAGAAAAAAACCACAGAGCTATGAATTTCAAAGCCAACCGCTGTTCCAGCAACCTCAAAAGCAAGTAAACGCTTGGCCTGTGCAAGAAAGTTTTGTGATTCCAGATGAAGATGAGCCTCCTTCAATTGACCCTAGATCCCCAACACCACGGAAAACGTATGCTTTCATGTCCCAGGATGCAGAAAAGATGCCACAACTTTGGCAAAGCCATGCATTCTATAGTGGATGGGGCGGAGATCTTCAGCAGCAGCAACAACTAAAACTTCAACAGCAGCAGCAGCAGCAACAGCAACAACAACTAAAACATCATCGCCATCTATATCATTCATCAGTCCCTCACACATACTATGAGCAAAGCCATGAGGAAATCAATGAGATAGTATTTGGGGCAGTGCAAGAGCAGGAAGGGAAGAAGGAAACTGTAGTTATCAAGCCTGTGGATTATGGTCAATCTCTCTATGATCATCACTATATTCGACCTCGAAACAGTTCTATGGGTCATATCAACAAGTACTAA
>Glyma02g03810.1 sequence type=predicted peptide gene model=Glyma02g03810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKLHFAFSFSLLFLLSNASAAPSTTLPAKIVSGFLSNAVPAFTKWVWSLKAPTKTAIGAKSMMKFESGYTVETVFDGSKLGIEPYAVEVLANGELLILDSANSNIYRISSSLSLNTRPKLVAGSAEGYSGHVDGRLREARMNHPKGIAVDNRGNIYIADIMNMAIRKISDSGVTTIAGGKWSRGGGHIDGPSEEAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGLTLGIAMLVGAGFFGYMLALLQHRLGTIVASQDLEGAAMSGISPSPYQKPLKSVRPPLIPSEDESDKQEESFIRSIGKLLTNAGASVVEIMGALFPGFRKKPQSYEFQSQPLFQQPQKQVNAWPVQESFVIPDEDEPPSIDPRSPTPRKTYAFMSQDAEKMPQLWQSHAFYSGWGGDLQQQQQLKLQQQQQQQQQQQLKHHRHLYHSSVPHTYYEQSHEEINEIVFGAVQEQEGKKETVVIKPVDYGQSLYDHHYIRPRNSSMGHINKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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