Glyma02g03160 - SoyBase

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Report for Sequence Feature Glyma02g03160

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2449863
stop:	2454682
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g03160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70160	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). \| chr1:26420159-26422345 FORWARD LENGTH=523	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_E4MW90	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-05-M08 n=1 Tax=Eutrema halophilum RepID=E4MW90_THEHA	SoyBase	E_val: 0	ISS
UniRef100_I1J5F4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5F4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g03160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g03160

Paralog	Evidence	Comments
Glyma01g04400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g03160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g027600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g03160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g03160

Limit To All Plant Sequences

>Glyma02g03160.2   sequence type=CDS   gene model=Glyma02g03160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCCTCTTCCCTCCACGCGCTCCTCATCATTCTCTTCCTAGGTTCCGCACACGCGCTCAAGGTCCCCTTCCGAGTCAACGATGTTCTCCCCGTTCTCCCCCACGGAATCTCCTGGCCGCTCCTCAACAACCTCCACAGCGCCGTCGACTTGCTCCCTTCCTTCGTCGCCGCCGTCCCTCCCGATAACGATTCCGTTCAGTGGAGAGCCGCATGCTTTTACGATAATCAAGCCTCCCTCGAATTCACCGCCCCCGGCCACGACGACGCCGACGGCTTGGGCGGTGCCGTGCTCCGTCTCAAGACAGAAGCTGCTCACAGTTGGACCTGCATGGATCTGTATGTATTTGCAACGCCTTATAGGATTACATGGGATTACTATTTCTCTGCGCGAGAACATACTTTGAAGTTTGATTCATGGGAAGATCCTGCAGAGTTGGAATATGTAAAGCGGCATGGGGTTTCTGTGTTTCTCATGCCATCGGGGATGCTGGGAACGCTCCTTTCTCTGGTTGATGTTTTGCCTCTATTCTCGAACACTGCATGGGGTCAGAATGCCAACTTAGATTTCCTAAAGAAACACATGGGAGCTACATTTGAGAAGCGCATTCAGCCTTGGCGTGCAACTGTTGATCCTGCAGATGTTCATTCTGGAGATTTTTTAGCTGTGTCAAAGATCCGTGGTAGGTGGGGAGGTTTTGAGACACTAGAGAAGTGGGTAACTGGTGCATTTGCTGGTCATACAGCAGTTTGCTTGAAGGATGAAATGGGAAATTTATGGGTTGGTGAATCTGGGCATGAGAATGAGAAGGGTGAAGAAATAATAGTGGTAATTCCCTGGCATGAATGGTGGACATTAGCTCTCAAAGATAATTCCAACCCACAGATAGCCTTGCTTCCCCTGCATCCAGAGTTGCGTGCAAGATTCAACTCCACTGCCGCATGGGAATATGCACGGAGCATGTCTGGCAAGCCATATGGTTATCATAATATGATATTCAGTTGGATTGACACAGTAGCTGACAACTATCCTCCACCTCTTGATGCTCACTTGGTAATTTCTGTCATGTCTATGTGGACAAGAATGCAGCCAGCTTATGCTGCAAACATGTGGAATGAAGCACTGAACAAGCGGTTAGGGACTGAGGATTTGGATTTGCATGACATTCTAATTGAGACTGAGAAGCGTGGTATAGCTTTTGATCAATTACTTACCATTCCTGAACAAGATGAATGGGTATACAGTGATGGGAAATCAACAACATGTGTTGCCTTTATTCTTTCAATGTATAAAGCGGCTGGAATATTCGGCCCTATTTCTAGCTCCATTCAAGTAACTGAATTCACAATTCGTGATGCATACATGCTTAGGATTTTTGAGGATAACCAAACACGTCTACCAAGATGGTGCAACAATGAGAACGATCGGCATCCATTCTGCCAGATTCTTGGTGAATATAGGATGGAATTGCCTGGCTATAACACCTTGGATCCTTATGCCAATATGAACGAGCACTGTCCTTCCCTTCCTCCAACTTATGACAGGCCCTTGAAATGTTAG

Predicted protein sequences of Glyma02g03160

Limit To All Plant Sequences

>Glyma02g03160.2   sequence type=predicted peptide   gene model=Glyma02g03160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPSSLHALLIILFLGSAHALKVPFRVNDVLPVLPHGISWPLLNNLHSAVDLLPSFVAAVPPDNDSVQWRAACFYDNQASLEFTAPGHDDADGLGGAVLRLKTEAAHSWTCMDLYVFATPYRITWDYYFSAREHTLKFDSWEDPAELEYVKRHGVSVFLMPSGMLGTLLSLVDVLPLFSNTAWGQNANLDFLKKHMGATFEKRIQPWRATVDPADVHSGDFLAVSKIRGRWGGFETLEKWVTGAFAGHTAVCLKDEMGNLWVGESGHENEKGEEIIVVIPWHEWWTLALKDNSNPQIALLPLHPELRARFNSTAAWEYARSMSGKPYGYHNMIFSWIDTVADNYPPPLDAHLVISVMSMWTRMQPAYAANMWNEALNKRLGTEDLDLHDILIETEKRGIAFDQLLTIPEQDEWVYSDGKSTTCVAFILSMYKAAGIFGPISSSIQVTEFTIRDAYMLRIFEDNQTRLPRWCNNENDRHPFCQILGEYRMELPGYNTLDPYANMNEHCPSLPPTYDRPLKC*

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