Report for Sequence Feature Glyma02g03150
Feature Type: gene_model
Chromosome: Gm02
Start: 2443145
stop: 2447742
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g03150
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G70150 AT
Annotation by Michelle Graham. TAIR10: zinc ion binding | chr1:26416898-26419521 FORWARD LENGTH=374
SoyBase E_val: 2.00E-110 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
UniRef100_G7K5L7 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MYND finger family protein n=1 Tax=Medicago truncatula RepID=G7K5L7_MEDTR
SoyBase E_val: 2.00E-117 ISS
UniRef100_I1J5F5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1J5F5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g03150
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g03150
Paralog Evidence Comments
Glyma01g04410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g03150 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g027500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g03150
Coding sequences of Glyma02g03150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g03150.2 sequence type=CDS gene model=Glyma02g03150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGGAAGCATGAATGCGGTTGTGGGGCATCCTCTGCTTCATTTGATTGTTTAGGGTTAAACAATGGTTGGGATCTCCCTAGTAATTTATGTCCCTGTTGTGGGCCTAGCTCTCCGGTATCAGATTCAGAGCAGTTGCATAGTTGGAGAGACTACTATAAGTGGAGATGCATCCCACTAGACTCGCTTGTTGCTTTGCTTCTTCAATCGCCACTTACAATATATCATGCTGCTCGACTTGTTGGAGTTACCGCCTTGAATCCTGAAATCATTGGACCTGAGAAAGAGCTGCTACAACTTGCTGTGTTTGGAGAATTACTGGCACTCTTCCCTGGTGTACGAATTCATATAGAACTTGTTGGACCTGCAATTCCTCCTCAAAGGGATGGTGAGAAGATTCACATTTCTAAGTATCCTTGTTGCAATGAAGACGAATGTGAATGCAAAATAGGAAGTACAGATACGTTCTTAGAAACACAATCTGGTATCACTTCTGCTTTGACATTGCAACTTTGGCAAGGATTCTATCATGACCGATATAGAGATATTGTTAAGGATTCCTTTCCTCGGCTAATAATTGCTCCAAATGGTGGCATTGCTGCTTATTCCAGTTGGTTACCAAGTATTGAGTTAATTAAAAAGATTGATGTCCCAGTTGTTTTTACTGATTATTGTGAAGAAGCTTGTCATCTTGCTGCCAGTTGCATTAAGACTGTAACTGGACGACCTCTTAAATTGCTTGTTCAGTTAAATCCTTTCAGGCAGCCCATGGCCGTGGAAGATAGCGTGCTGTTACTTCCCTGCTACTCGAATTGTTATCTTTTTGGATGTAACGAGAATACTCATAATATCTTGAGCCACTATATAATCCAGAACAACTAA
Predicted protein sequences of Glyma02g03150
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g03150.2 sequence type=predicted peptide gene model=Glyma02g03150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MWKHECGCGASSASFDCLGLNNGWDLPSNLCPCCGPSSPVSDSEQLHSWRDYYKWRCIPLDSLVALLLQSPLTIYHAARLVGVTALNPEIIGPEKELLQLAVFGELLALFPGVRIHIELVGPAIPPQRDGEKIHISKYPCCNEDECECKIGSTDTFLETQSGITSALTLQLWQGFYHDRYRDIVKDSFPRLIIAPNGGIAAYSSWLPSIELIKKIDVPVVFTDYCEEACHLAASCIKTVTGRPLKLLVQLNPFRQPMAVEDSVLLLPCYSNCYLFGCNENTHNILSHYIIQNN*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
