Glyma02g03120 - SoyBase

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Report for Sequence Feature Glyma02g03120

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2422513
stop:	2425655
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g03120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G70140	AT	Annotation by Michelle Graham. TAIR10: formin 8 \| chr1:26412688-26415048 REVERSE LENGTH=760	SoyBase	E_val: 8.00E-176	ISS
GO:0002679	GO-bp	Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response	SoyBase	N/A	ISS
GO:0006396	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA processing	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0015824	GO-bp	Annotation by Michelle Graham. GO Biological Process: proline transport	SoyBase	N/A	ISS
GO:0016043	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular component organization	SoyBase	N/A	ISS
GO:0022402	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell cycle process	SoyBase	N/A	ISS
GO:0030036	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005911	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell-cell junction	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
GO:0005522	GO-mf	Annotation by Michelle Graham. GO Molecular Function: profilin binding	SoyBase	N/A	ISS
GO:0051015	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin filament binding	SoyBase	N/A	ISS
KOG1922	KOG	Rho GTPase effector BNI1 and related formins	JGI		ISS
PTHR23213	Panther	FORMIN-RELATED	JGI		ISS
PTHR23213:SF18	Panther	FORMIN-RELATED	JGI		ISS
PF02181	PFAM	Formin Homology 2 Domain	JGI		ISS
UniRef100_G7K5M3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Formin-like protein n=1 Tax=Medicago truncatula RepID=G7K5M3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336D27	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336D27 related cluster n=1 Tax=unknown RepID=UPI0002336D27	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g03120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g03120

Paralog	Evidence	Comments
Glyma01g04430	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g03120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g027200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g03120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g03120

Limit To All Plant Sequences

>Glyma02g03120.1   sequence type=CDS   gene model=Glyma02g03120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATTTGAACATGATGCTTCTTCTTCTTGTGATCCTTTTTGTTTTACAAGGTTTTCCAATACCAACATGCTATTGCCAGACCAATACTCCTCAGAACATTGAAACATTTTATCCAATTCAAACACCCAAACCACCCCTCCTAATCCAACCTCCTGAGGCACAACCAAAGCCACAAGCATCACCACCATCACCAAGACCAGTGGCTGCATCAAAAACCTCTTCATCAAGCAGTAAGATCGGAACAGCGGTGGCTGCAACAGCAGCAGGTACTCTAGTTGTTTCTGGTTTGATTTTCTTCTTGGTTCAAAGGTGCTTCAGAGCAAGGAAGAGAAAGGAGGCCAAAAACAACACTGCTTCCGCTGTGGATAGGCGCGTTGTGCCTCAGGTAGACGTGTTCAAGAGAATGGAAGGGAACGTCAAGGGACTAATTGTTGATGATGATGGTTTGGATGTGGTTTACTGGAGAAAACTCGAAGGTAAGAAATTACCTGACAAGGATTTCCAAAGGGAGGTTTTGGATAGCACCGAAGACAAAATAGAAGATGATCATGAGGGGAACAATGGGAAAAGATCTGAGTCCATTCAAGAAACTCTTCTGCTTAGAGACAGATCTTCAGCATCTCACATGAATATATTTCTTCCAGAACAGTCATATACAATCATGAGAATTCCACCTCCTGCTCCTCCTCCCAGTGTTCCTTCATCAATTGGAGGCTCTTCTACTCAACTATCTTCTCCACCCTTTACCCCTTCATCACCAAAACCACTCAACACTTTTTTCTCATCAATTCCAAACACGTCAAGTCCTGCACCACCAATTCCGCCTCCAACAATACCTGATAGAAATAATCAAGCACCAGCACCACCTCCTCCTCCACCACCAATCCCGGGTATAAAAAGCTCAGCACTGCCTCTGCCTCCTCCTCCACCAATCCCAGTTAAAAAGAGCTCAACGCCTCCACCACCTCCTCCACCAATTCCTCCTAGAAAGAGTCCAGCACCACCTCCTCCTCCACCAAAGGCACATGGTTTGAAGTCATCATCAAAACCACCACCTACCCCTATTGAAAGAACACCAAGTACCACAAGTAAAGAAGGCAACACTTCACCTGAGGTAAAACTGAAGCCATTACATTGGGATAAGGTGACTACCAACCTTGATCACTCTATGGTATGGGACAAAATGGACCGAGGTTCTTTCAGGGTTGATGATGATCTTATGGAAGCTCTTTTCGGGTTAGTGGCTGCCAACCGAAATGACAGTACCCCAAAAGTAAATAATTCAATGAGTCCTAGCAGGGATGCTTTGGCTCCATCAGTGAATACCTTCATTCTTGACCCCAGAAAATCACAAAACATTGCTATTGTTTTGAAGTCTCTGGCGGTCTCGCGCAAAGAAATTATTGAAGCACTCATTGATGGTCAAGGCCTTAATGCAGACACCATCGAAAAGCTTGGTAGAGTAGCCCCAACAGAAGAAGAGCAAACACTTATAGTTGCATATGAAGGAAACCCTTCAAAACTTGCTGCAGCTGAATCTTTCCTACATCACATCCTCAGAGCAGTTCCTTCGGCATTTAAGCGCTTGAATGCTTTGTTATTCAGGTTGAATTATGATTCTGAGATTGTAGAAATCAAGGAGTTTCTGCAGACACTTGCACTGGGGTGCAAGGAGCTTCGAAACCAAGGAATGTTTGTGAAGCTTCTTGAAGCAGTGCTTAAGGCCGGAAATCGCATGAATGCAGGCACTCAAAGGGGCAATGCTCAAGCTTTCAACTTGGTTTCTCTCAGAAAGCTCTCTGATGTCAAGAGTACTGATGGAAAAACCACATTGCTTCGCTTTGTGGTTGAAGAAGTAGTTCGTGCGGAAGGAAAACGCGCTGTTCTTAACCGCAATCACAGTTTGAGCCGTAGTAGCAGTAGGAACAGCAACAGCAGTGTGGACTCTCAAAACTCTGCTGTTTCAAATGAACAAAGGCAAAGGGAATACATAACACTAGGATTGCCAGTTGTAGGAGGGATCAGTTCCGAGTTTTCCAACTTAAGGAAAGCTGCGGTTACAGATTACAAAAGTTTTGTTGGTTCAATCTCATCACTCTCAGCTAGGATTGTTGAGATTAGAGAACTTGTTTCCCAGTGTGGAAATGACAAAGGAGGCAACTTTGTGAGAGAAATGAACAATTTTCTTGAAAATGCTGAGGAGGAACTTAGATTAGTGAGGGAGGAGCAAACAAGGGTAATGCAGCTTGTCAAAAGAACAACAGATTATTATCAAGGAGGATCTTCAAAAGAGAGTGCAGAAAACCCTCTTTATCTATTTGTCATAGTTAAGGATTTTCTGGGAATGGTTGATCAAGCATGCATTGAGATTGCTCGTAACATGCAGAAGAGAAAGACAAAGACATCTTTGTAA

Predicted protein sequences of Glyma02g03120

Limit To All Plant Sequences

>Glyma02g03120.1   sequence type=predicted peptide   gene model=Glyma02g03120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYLNMMLLLLVILFVLQGFPIPTCYCQTNTPQNIETFYPIQTPKPPLLIQPPEAQPKPQASPPSPRPVAASKTSSSSSKIGTAVAATAAGTLVVSGLIFFLVQRCFRARKRKEAKNNTASAVDRRVVPQVDVFKRMEGNVKGLIVDDDGLDVVYWRKLEGKKLPDKDFQREVLDSTEDKIEDDHEGNNGKRSESIQETLLLRDRSSASHMNIFLPEQSYTIMRIPPPAPPPSVPSSIGGSSTQLSSPPFTPSSPKPLNTFFSSIPNTSSPAPPIPPPTIPDRNNQAPAPPPPPPPIPGIKSSALPLPPPPPIPVKKSSTPPPPPPPIPPRKSPAPPPPPPKAHGLKSSSKPPPTPIERTPSTTSKEGNTSPEVKLKPLHWDKVTTNLDHSMVWDKMDRGSFRVDDDLMEALFGLVAANRNDSTPKVNNSMSPSRDALAPSVNTFILDPRKSQNIAIVLKSLAVSRKEIIEALIDGQGLNADTIEKLGRVAPTEEEQTLIVAYEGNPSKLAAAESFLHHILRAVPSAFKRLNALLFRLNYDSEIVEIKEFLQTLALGCKELRNQGMFVKLLEAVLKAGNRMNAGTQRGNAQAFNLVSLRKLSDVKSTDGKTTLLRFVVEEVVRAEGKRAVLNRNHSLSRSSSRNSNSSVDSQNSAVSNEQRQREYITLGLPVVGGISSEFSNLRKAAVTDYKSFVGSISSLSARIVEIRELVSQCGNDKGGNFVREMNNFLENAEEELRLVREEQTRVMQLVKRTTDYYQGGSSKESAENPLYLFVIVKDFLGMVDQACIEIARNMQKRKTKTSL*

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