SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59900 | AT | Annotation by Michelle Graham. TAIR10: pyruvate dehydrogenase complex E1 alpha subunit | chr1:22051368-22053660 FORWARD LENGTH=389 | SoyBase | E_val: 0 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0043231 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle | SoyBase | N/A | ISS |
| GO:0004739 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pyruvate dehydrogenase (acetyl-transferring) activity | SoyBase | N/A | ISS |
| GO:0016624 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| KOG0225 | KOG | Pyruvate dehydrogenase E1, alpha subunit | JGI | ISS | |
| PTHR11516 | Panther | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT (BACTERIAL AND ORGANELLAR) | JGI | ISS | |
| PTHR11516:SF4 | Panther | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT | JGI | ISS | |
| PF00676 | PFAM | Dehydrogenase E1 component | JGI | ISS | |
| UniRef100_A8IXJ9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pyruvate dehydrogenase complex E1 alpha subunit dehydrogenase n=1 Tax=Brassica rapa RepID=A8IXJ9_BRACM | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JBV5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBV5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g03080 not represented in the dataset |
Glyma02g03080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g04468 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g026800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g03080.1 sequence type=CDS gene model=Glyma02g03080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCTATCACGTTTGTCCCACCGCAGCATCGGATCCACTCTCACAAAACCCTTCTCCGCCGCCGCCGCCTCCGCCGCCTCCTCCCGTTCGATCTCCACCTCGGACACCCCCTTAACAATCGAGACCTCTGTCCCCTTCACCGCGCACAACTGCGACCCCCCGTCACGCGCGGTCGCGACCTCCTCCTCGGAGCTCCTCACCTTCTTCCGCGACATGGCCCTGATGCGGCGCATGGAGATCGCCGCTGACTCCCTCTACAAGGCCAAGCTCATCCGCGGCTTCTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGCCATCACTAAAAAGGACTCCATCATCACCGCCTACCGCGACCATTGCATCTTCGTCGGCCGCGGTGGCACGCTCCTGGAGGTCTTCGCCGAGCTCATGGGCCGCAAGGAAGGATGCTCGAAGGGGAAGGGCGGGTCCATGCATTTTTATAAGAAGGAGAGTGGGTTTTATGGTGGGCATGGGATTGTTGGGGCGCAGGTTCCGTTGGGGTGTGGGTTGGCGTTTGCTCAGAAGTATTCTAAGGACGAGAGTGTCACTTTTGCTATGTATGGAGATGGCGCTGCCAATCAGGGACAGCTCTTTGAGGCGCTTAATATCGCCGCGCTTTGGGATCTTCCTGCTATTTTGGTCTGCGAGAATAATCACTATGGGATGGGGACTGCGGAGTGGAGAGCTGCCAAGAGTCCTGCTTATTATAAGCGTGGGGATTACGTGCCTGGCTTGAAGGTTGATGGTATGGATGTTCTTGCTGTTAAACAAGCTTGCAAATTTGCAAAGGAACATGCTTTGAAGAATGGACCCCTTATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATTGCTGCTGAAAAGGAGCTAAAGGACATTGAGAAAGAAGTCAGAAAAGAAGTTGACGAAGCCATTGCTAAAGCAAAGGAGAGTCCAATGCCAGATCCATCTGATCTATTTACCAATGTCTATGTTAAAGGTTACGGAGTTGAGACATTTGGTGCTGATAGGAAAGAAGTGAGAGCTACTTTACCATAA
>Glyma02g03080.1 sequence type=predicted peptide gene model=Glyma02g03080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSRLSHRSIGSTLTKPFSAAAASAASSRSISTSDTPLTIETSVPFTAHNCDPPSRAVATSSSELLTFFRDMALMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKKDSIITAYRDHCIFVGRGGTLLEVFAELMGRKEGCSKGKGGSMHFYKKESGFYGGHGIVGAQVPLGCGLAFAQKYSKDESVTFAMYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALKNGPLILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLVLSHDIAAEKELKDIEKEVRKEVDEAIAKAKESPMPDPSDLFTNVYVKGYGVETFGADRKEVRATLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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