Glyma02g03050 - SoyBase

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Report for Sequence Feature Glyma02g03050

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2349694
stop:	2355263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g03050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27210	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr1:9455669-9457917 REVERSE LENGTH=625	SoyBase	E_val: 1.00E-164	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PF02985	PFAM	HEAT repeat	JGI		ISS
UniRef100_G7K6Y7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Microtubule-associated protein TORTIFOLIA1 n=1 Tax=Medicago truncatula RepID=G7K6Y7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023370EE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023370EE related cluster n=1 Tax=unknown RepID=UPI00023370EE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g03050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g03050

Paralog	Evidence	Comments
Glyma01g04500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g03050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g026600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g03050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g03050

Limit To All Plant Sequences

>Glyma02g03050.2   sequence type=CDS   gene model=Glyma02g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCCGGCGCCACTCACTAAGCGGGCCGCCACCACTCTCCGGCACCGAGTCGACTCAGAACCTCCGACAGCGAGTCATCACGTGCCTCAACAAACTCTCCGACCGCGACACTCTCGCCGGCGCCGCCGCGGAACTCGAGTCCATCGCCAGAACCCTAAACCACGACTCGTTCTCGTCCTTCCTCTCTTGCATTCACAACACTGATTCCTCTTCCAAAGCACCAGTTCGAAAACAATGCGTTCATCTCTTAAACGTTCTCTCGCGCTTCCACGGCGAAGCGCTTTGGCCTTTCATATCGAAAATGCTCGCCACCGTGCTCCGGCGGCTCCGCGACTCCGACTCCGCCGTGCGATCCGCGTGCGTGGACGCCGTCGCGTCGATGTCGTCGCGGATCACGGGACCGTCGTTCTCCGCCGCGTTCCTGCGGCCGCTCATGGACGCGCTGGCGCAGGAGCAGGAGGCCAACGCGCAGATCGGCGCCGCGCTGTGCCTCGCGGCGGCGGTCGAGGCGGCGCCGGACCCCGATGCGGAGGCGCTCCGGCGTAGCGCGCTGCCGCGGCTCGGGAAGCTCGTGAAGAGCGAGGCGTGCAGGGCGCGGGCGGCGCTGCTGGTTCTGATCGGAAGCGTGGTCGGCGCTGGCGGCGCTTCGAGCCGCGGTGCGGTGAACTGGCTCGTGCCGTGCCTAGTCGAGTTCCTCGGCAGCAAGGACTGGACGGTGAGGAAGGCCGCGGCGGAGGCGCTGGCGAAGGTGGCTTCGGTGGAGAGAGATCTGGCGTCGCAGCATAAGGTTCTGTGTTTGAATTCGTTGCAGAATCGGAGGTTTGATAAGATCAAAGTGGTTCGGGAGACTATGAATCGTGCATTGGAGACGTGGAAGGAGGTAACCGAGGATGCTCCTGCTTACGTTAAATCTGAATGTGCTTCTGTTGGCACAGATGATGGTAAAAGTCAGTGTGTCTCTAAAAGTTCACCCGATGTTGGCTCTAAGTTGTCTTCTAAAACAGCCCCTGCCAACAGGTCCCCTCCATCAGTGATTTCATTCATGTCGTCCATGAAAAGAGAGAGTTCTCTAAAGAGTAATGAGAAGCATTTGAGAATGGGGACATTGAATCATCAGGGTCATGAGAAATCCTCCAATGAGAAACGTGAAACTCCATTTTCGAGGTCCTCCCACTCAAATTTGTCTAGGGAAGATGATATTAAAAGGTGTGATGTTGAAGTTTCTAAGCCACCCCCATATCAAAACGGGGTAAATTCGAGGGCAGAGATAAAGCGTGTTCTCTTTAGCAAGGTGTCTGATGAAAAAATGAGGAGATTCAGTAGTTCAAAATCTTGTGTGGTTCCATGTATTGATGATGATGATCTTGATGCAAATGAAGTTTGTGAGAGCCCACAAGATGTTGAAGACTTTGCTTTGATCCGTGAACAACTTCTTCAAATTGAAAACCAGCAATCAAATCTGTTAGACCTACTCCAGAGATTTATTGGAAGCTCCCAAAGTGGTATGAATTCTCTGGAGTCACGTGTACATGGCCTAGAGATTGCCCTGGATGAAATATCTCAGGATTTGGCTGTTCCAGGTGCTAGGGTTTCCAATATTGATGCCACAGAAGACACTTGTTGCAAGCTACCTGGTACTGACTTTTTGAGTTCTAAATTCTGGAAGAAGACAGAAGGTCGTTATTCCACATCAAGGTTCTCTTTAGGAAGCATACCATCAACAAATGCTGTGCATAATGCAACCAATAAAGATGGAAGCAGAGAAATATTAACTGCAAATAACAGCCGATTGCAACATGGTAAGGGTGGATATTTTGTGAATCCATCGGCAGAAGTTCAAAGCGATTTGAAAGGGCATCATACGTATAAAGTGTCTAAAAACATGGTCCAAGACGCCATGAGGAGATATGATGGCATTCAACCTGCTACTGAATCACTGAGGAACCAGAATATCAGGTCATCCGTGTAG

Predicted protein sequences of Glyma02g03050

Limit To All Plant Sequences

>Glyma02g03050.2   sequence type=predicted peptide   gene model=Glyma02g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSRRHSLSGPPPLSGTESTQNLRQRVITCLNKLSDRDTLAGAAAELESIARTLNHDSFSSFLSCIHNTDSSSKAPVRKQCVHLLNVLSRFHGEALWPFISKMLATVLRRLRDSDSAVRSACVDAVASMSSRITGPSFSAAFLRPLMDALAQEQEANAQIGAALCLAAAVEAAPDPDAEALRRSALPRLGKLVKSEACRARAALLVLIGSVVGAGGASSRGAVNWLVPCLVEFLGSKDWTVRKAAAEALAKVASVERDLASQHKVLCLNSLQNRRFDKIKVVRETMNRALETWKEVTEDAPAYVKSECASVGTDDGKSQCVSKSSPDVGSKLSSKTAPANRSPPSVISFMSSMKRESSLKSNEKHLRMGTLNHQGHEKSSNEKRETPFSRSSHSNLSREDDIKRCDVEVSKPPPYQNGVNSRAEIKRVLFSKVSDEKMRRFSSSKSCVVPCIDDDDLDANEVCESPQDVEDFALIREQLLQIENQQSNLLDLLQRFIGSSQSGMNSLESRVHGLEIALDEISQDLAVPGARVSNIDATEDTCCKLPGTDFLSSKFWKKTEGRYSTSRFSLGSIPSTNAVHNATNKDGSREILTANNSRLQHGKGGYFVNPSAEVQSDLKGHHTYKVSKNMVQDAMRRYDGIQPATESLRNQNIRSSV*

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