Glyma02g03040 - SoyBase

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Report for Sequence Feature Glyma02g03040

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2335410
stop:	2337227
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g03040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27200	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF23) \| chr1:9449812-9451539 REVERSE LENGTH=575	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
PF01697	PFAM	Domain of unknown function	JGI		ISS
UniRef100_B9S2H4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UPF0392 protein RCOM_0530710 n=1 Tax=Ricinus communis RepID=Y232_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JBV1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JBV1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g03040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g03040

Paralog	Evidence	Comments
Glyma01g04515	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g03040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g026500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g03040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g03040

Limit To All Plant Sequences

>Glyma02g03040.1   sequence type=CDS   gene model=Glyma02g03040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCAGAGCTGCAACGCCGGAAGAGGAAGCGTGTGGTGGCAGCAAGACACCTTCACATCTCATCATCAAGATCACTGTTCCTCTGCTTCTCCTTCTTAATCTTCCTTCTTTTTTGGTATTCCCACCATCATTTTTTCTTCTTCACCCCTTCTACTTTTAGACCTTCTCTCACAGCCTCAACTTTATCTCTTCTCTATTCCTCTGCAAGCAACTCCGTTCTTGACCCTTTTCAACCCACCGCACCCTCCTACTCTCTCCAACACCGTATCCTCTTCCCCGACCACCATCTCCTCATTATCACCAACCCCCAACAACAAAAGCTCCACGAACTAGAGTGCGTCTACTACACGCTTCACCCCAACGCTTCCTCTTCCGGTTCACCTGAACCGGTTTTCCAAGTTCATGTTCGACCGGTCCTGTCCACGGACCGTTATGACGAATCTCGATCCATTGTTAGGTGCCCACTTACCCAAACGAACTCCTCTGCCGGCGACGCCTCCAAAGCCGTCGACATGCGGCGGCGCGGCGAGGTGGGTCATCGGAATTTGGGCGTTTTGATGAACCAAACGGCTCAATCTTGGGACAGGGTGGCGTACGAGGCTACCCTTGACGGAGACACCGTGGTTGTGTTCGTGAAAGGGCTGAATCTCCGGCCACACAAGATATCGGATCCGACCCGGATCCGGTGCCATTTCGGGCTGAAAAGTTTCGACAAAGACAATGCCTTTTTACTTACCACGAGAGCTGTTTCTGTGGCTCAAGAAGTTGTGAGGTGTATGTTGCCACAGAGCATGAGGAATAATCCTGATAAGGCTCGAGGAATTCGGGTTACTGTGAGTTATTTGGGTGGCAATGTGAGGCACCCGGTTCGTGTTCTTGTGCGTTCTGTGTCTAGGGTTAGTAGCCCTGGTGGTGGTGGTAAAGTTCAGAAGAGGAATAGAAAGAAGTATGAGTTGTGTGCGTGTACTATGGTGTGGAACCAAGCTTCTGCGCTCAGGGAGTGGGTTATGTACCATGCTTGGCTTGGAGTGGAGCGGTGGTTTATCTATGATAACAACAGTGATGATGACATTGAGAAGGTTGTTCAGGATCTTGATCTTCAAGGGTTTAATGTTAGTAGAAAATCCTGGCCTTGGATTAAGACTCAGGAAGCAGGGTTTTCGCATTGTGCTTTGAGGGCTAGAGAGGAGTGTAAATGGGTGGGGTTCTTTGATGTTGATGAGTTCTTCTACTTCCCCAGTGAGTTTCGGCAACCATTGGGGGAGGGTGTTCCTGGTGAGAATTATCTGAGATCTGTGGTTGCCAATTTCTCATCTTCGAAATTTATTGGGGAGATAAGAACAGCTTGTCATAGCTTTGGCCCTTCTGGGTTGAAGTCACCCCCGAAACAAGGGGTTACTCTAGGGTACACTTGCCGGCTTCAAAGCCCCGAGCGGCACAAATCCATTGTGCGGCCTGATTTGCTTGACATCAGTCTTTTGAATGTGGTGCACCATTTTCAGCTTAAGGAGGGGTTTAGATACCACAACATGCCTGAAGGTACTGCTATAGTAAACCACTACAAGTACCAGGTATGGGAAACCTTCAAAGCCAAGTTCTTCAGAAGGGTTGCTACCTATGTGGTGGACTGGCAGGAGGACCAGAACAAAGGGTCAAAGGATAGAGCACCGGGATTAGGAACAGAAGCCATTGAACCACCTAACTGGCGGCAACAGTTTTGTGAGGTTTGGGATACTGGCCTGAAGAACTTCCTTGTATCTTATTTTACTGATCCTGCAACAGGGTTGATGCCCTGGGAGAGGTCTTCTCAATAA

Predicted protein sequences of Glyma02g03040

Limit To All Plant Sequences

>Glyma02g03040.1   sequence type=predicted peptide   gene model=Glyma02g03040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPELQRRKRKRVVAARHLHISSSRSLFLCFSFLIFLLFWYSHHHFFFFTPSTFRPSLTASTLSLLYSSASNSVLDPFQPTAPSYSLQHRILFPDHHLLIITNPQQQKLHELECVYYTLHPNASSSGSPEPVFQVHVRPVLSTDRYDESRSIVRCPLTQTNSSAGDASKAVDMRRRGEVGHRNLGVLMNQTAQSWDRVAYEATLDGDTVVVFVKGLNLRPHKISDPTRIRCHFGLKSFDKDNAFLLTTRAVSVAQEVVRCMLPQSMRNNPDKARGIRVTVSYLGGNVRHPVRVLVRSVSRVSSPGGGGKVQKRNRKKYELCACTMVWNQASALREWVMYHAWLGVERWFIYDNNSDDDIEKVVQDLDLQGFNVSRKSWPWIKTQEAGFSHCALRAREECKWVGFFDVDEFFYFPSEFRQPLGEGVPGENYLRSVVANFSSSKFIGEIRTACHSFGPSGLKSPPKQGVTLGYTCRLQSPERHKSIVRPDLLDISLLNVVHHFQLKEGFRYHNMPEGTAIVNHYKYQVWETFKAKFFRRVATYVVDWQEDQNKGSKDRAPGLGTEAIEPPNWRQQFCEVWDTGLKNFLVSYFTDPATGLMPWERSSQ*

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