SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G59840 | AT | Annotation by Michelle Graham. TAIR10: cofactor assembly of complex C | chr1:22026569-22028174 FORWARD LENGTH=297 | SoyBase | E_val: 1.00E-91 | ISS |
| GO:0010190 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytochrome b6f complex assembly | SoyBase | N/A | ISS |
| GO:0010207 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem II assembly | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF11152 | PFAM | Protein of unknown function (DUF2930) | JGI | ISS | |
| UniRef100_Q9XIE5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F23H11.16 protein n=2 Tax=Arabidopsis thaliana RepID=Q9XIE5_ARATH | SoyBase | E_val: 2.00E-85 | ISS |
| UniRef100_UPI0002336D23 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336D23 related cluster n=1 Tax=unknown RepID=UPI0002336D23 | SoyBase | E_val: 1.00E-137 | ISS |
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Glyma02g03031 not represented in the dataset |
Glyma02g03031 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
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| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g03031.1 sequence type=CDS gene model=Glyma02g03031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTTGAATGGAAAGTTTAATGATGGAAGCGGGAACTGCTCTCAGTCTCCGACTCCACACTCGCATTCCCATTCCCATCAACACTGCCAATTCAAATACCTTATTATTCCAACCTCGCTTCACTCTTTCATCTCATTCTCCTTCTTCCTTTTCCGCTTACAGTTACAGAGGCCCCACACCAAAACGCCCCTTCCTCGCCGACTGGGTCTCCCAAAACGACGACGTCGTTCGCACCCTCCCAATCTACGTCGGCTCTGCCTCCCTCTTCGCCATCCTCCTAAACCGCTCCCTGTCCGGCATCGCCCCCGTCGTCGACGCCGGCAGGCACGTCCCCATTCGCAGTCCCGAGCTGACCTCTTGACTTTGGGATTGGCCGTTACCAATATTTTGGCAGGCCTCGTTTGGCTTTCAGTAAAACCTAAATCTATTACTGTGGTAAATCCTCGAGGAGTTGAATGCAAGAGTTTGTGCGCTACACTCCCTGAAGTTGCACGTAATGAGTTGCTTTGGGTGTGGGAATCTCTATCAGATGCCACTTGTTGTCGTTCACTTGTTGTTGTTTATGAGAGCAGTTGTGTACTCCAAATTGGTTTTGCAGCAGAATCTTCTCCTGGGGATGGTGACGCTGTAAGTGTGGATGCCAATAAATTGATGCAAGGATCAGTATACCAGGGGGTTATGAAATCTGGTGCTCAGAGTTACTTGGCTAATCTATCTCTTTATCCTGGGAAATCTGAGCTGCCATTTCTACCTTCAAATACACAGGCAGTAATTTTACAACCACTTGGAGATAAAGGGATTGCAATTATTGGTGGTGACACGATACGAGGTTTCACTGGTTCTGATCAGGTGTGGATTACTTATATTGGAGCGAAGCTGGATTCTAGCCTTGCAAAATATCTGAAACATCACCCTCTGACTTCACAAGATTAA
>Glyma02g03031.1 sequence type=predicted peptide gene model=Glyma02g03031 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDLNGKFNDGSGNCSQSPTPHSHSHSHQHCQFKYLIIPTSLHSFISFSFFLFRLQLQRPHTKTPLPRRLGLPKRRRRSHPPNLRRLCLPLRHPPKPLPVRHRPRRRRRQARPHSQSRADLLTLGLAVTNILAGLVWLSVKPKSITVVNPRGVECKSLCATLPEVARNELLWVWESLSDATCCRSLVVVYESSCVLQIGFAAESSPGDGDAVSVDANKLMQGSVYQGVMKSGAQSYLANLSLYPGKSELPFLPSNTQAVILQPLGDKGIAIIGGDTIRGFTGSDQVWITYIGAKLDSSLAKYLKHHPLTSQD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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