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Report for Sequence Feature Glyma02g03000

Feature Type:gene_model
Chromosome:Gm02
Start:2299681
stop:2303223
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g03000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69980AT Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:26356559-26357647 REVERSE LENGTH=205 SoyBaseE_val: 1.00E-46ISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
UniRef100_I1JBU7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBU7_SOYBN SoyBaseE_val: 6.00E-160ISS
UniRef100_O04546UniRef Annotation by Michelle Graham. Most informative UniRef hit: F20P5.28 protein n=1 Tax=Arabidopsis thaliana RepID=O04546_ARATH SoyBaseE_val: 2.00E-31ISS

Expression Patterns of Glyma02g03000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g03000
ParalogEvidenceComments
Glyma01g04560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g03000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g026000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g03000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g03000
>Glyma02g03000.1   sequence type=CDS   gene model=Glyma02g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTTCCAAATTCTCAATTGTTTCTTCCATTCTTGTTGTTGTTGTTCTTCGCGATAACTCCCTTTCGCGGTTCAGGGCAGCAAACGGATTGGAACAGCGAAGAGACTCAACATGGAAATGGGGTTCGCCGCAGAGTTCTTCTGAGTTTCAAAGAGAAGCCCTCAGGAAGTAACGTTACCTTTGAATGTACTCCTTCGGGTCCTTGTGTGCCCTGTCTCTACTCTGAGAAGGGTGATGAGAAATATCGATGCAGTGAGACTGGCTACCGAATTCCATTCAAATGTTTAGAGATTAAAGATTCAACAAAGGATGCAAAGAAAACAAAGTCTCAAAAAGGTCGGTTGTCTTTGGAAATTTCTGATGGTATTGCAGAATCTCATAAAGTGTCACATGACGCTGGAGAGATCAATCCTTCACAATCACATAGAAGATTAGTGGACGATTCATCGTCTTCAGATAATAGTTCACAGGCTTACATCACTTACAGAAGCTGTATAACCCCAGTTAATGAAGAGAAGTTGTCGGTGCTTAATTTTGAGGGGGTGGTGATTTTTTTCTTACTAATCAGTGGATCAATCATATACTTGAGAAAAAAGAAGGTCGCATCCATGTCTGGTTATGTAGCAGGAAGGGGTCAGAACAACTCTCGATTTTGA
Predicted protein sequences of Glyma02g03000
>Glyma02g03000.1   sequence type=predicted peptide   gene model=Glyma02g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFPNSQLFLPFLLLLFFAITPFRGSGQQTDWNSEETQHGNGVRRRVLLSFKEKPSGSNVTFECTPSGPCVPCLYSEKGDEKYRCSETGYRIPFKCLEIKDSTKDAKKTKSQKGRLSLEISDGIAESHKVSHDAGEINPSQSHRRLVDDSSSSDNSSQAYITYRSCITPVNEEKLSVLNFEGVVIFFLLISGSIIYLRKKKVASMSGYVAGRGQNNSRF*






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