Glyma02g02927 - SoyBase

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Report for Sequence Feature Glyma02g02927

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2227792
stop:	2232373
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02927

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10417	AT	Annotation by Michelle Graham. TAIR10: Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. \| chr1:3424616-3427457 REVERSE LENGTH=431	SoyBase	E_val: 1.00E-88	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9XIK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T10O24.2 n=1 Tax=Arabidopsis thaliana RepID=Q9XIK8_ARATH	SoyBase	E_val: 2.00E-20	ISS
UniRef100_UPI0002336C2B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C2B related cluster n=1 Tax=unknown RepID=UPI0002336C2B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02927

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g02927 not represented in the dataset	Glyma02g02927 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02927

Paralog	Evidence	Comments
Glyma01g04623	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02927 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g025300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02927

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g02927

Limit To All Plant Sequences

>Glyma02g02927.2   sequence type=transcript   gene model=Glyma02g02927   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCTCAAGCTTTCGAAGCTGAAGCTCCAACTACAAGCCCTCGTCGCCGAAGCTCGAGATCTCAGGGACAGGGAACGCTCCGCCACCGAGCAGCTCCACCTTCTAATCCAGAAGCTGAAGCGGAACGAGGAGGAGTGCGGCAGAAAGATACAGGAATTGCTGGACGAGTTGGCTTCTGTTAAAGAGGAGCGCCAGAAACTGGAGAGAAAGGTGATTTATCTTGAGAACGATAATGTGCTGCTTGAGAACAAGCAGAAAGAGTTGAAGGGAACGCTGAATAATTTACTTCAGTCTAGGGAAAACTTTGTGAATGCTTACGAGGAATCTACTTCTCAAATGAAACGTTCAATTGAAGCCAAAGATAGGATGCTCAGTGTCCTTTCAGAGAAAATAAGCTCTTATGTAGCATTGTTTGATTCAATAGAGAAGGAGGCGTTTTCTATCAAGCAAATTGTGGATAAAGTCCAGAACGTTGTCAATGATAGAGAGGAAGTTGTGGCCGGCTTGAGAAACAAAATGGATTGGGTCTCTGCATTTGAAAAAGAATTTGTTGAAAATATCTCTGATCTAAGAAATAAACTGGAAAACAATGAGTCTGAATTAAGAAGAAAGGATAGAATCATCTCAGAACTTGAAGCAAAGCTGGATGTGGCAAAAGTTTGCAACCATAACCAAGCTCAAATGGAAGATATTCAGAAAACTTTATCTGCAAAGGATGCGGAGATACATAATTTAATTTCAGACAAAGAGGTTTTACATTATGAAGTTGGAAGCTTAAGACTTGTCTTACAGAGGATTCAGGATACTGTAACAAATATGAATGAAGAGGACAAAAGGTTATTCTCATCAATTTTGCAACATAAAGAAGCAATTATAACGGATATGGACATTGTAGGTAACGGGTAAGGTTAATTTATTTAATGGTACATCTGTTAATTTTTAGAAATTACTGTCTGAATTTATAGGCTTAATACAGAAAAAAAACTCTCTTGGAGTTAGACATGTCTTTCCTAGACAGCTGGTTCATTG

Coding sequences of Glyma02g02927

Limit To All Plant Sequences

>Glyma02g02927.1   sequence type=CDS   gene model=Glyma02g02927   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCTCAAGCTTTCGAAGCTGAAGCTCCAACTACAAGCCCTCGTCGCCGAAGCTCGAGATCTCAGGGACAGGGAACGCTCCGCCACCGAGCAGCTCCACCTTCTAATCCAGAAGCTGAAGCGGAACGAGGAGGAGTGCGGCAGAAAGATACAGGAATTGCTGGACGAGTTGGCTTCTGTTAAAGAGGAGCGCCAGAAACTGGAGAGAAAGGTGATTTATCTTGAGAACGATAATGTGCTGCTTGAGAACAAGCAGAAAGAGTTGAAGGGAACGCTGAATAATTTACTTCAGTCTAGGGAAAACTTTGTGAATGCTTACGAGGAATCTACTTCTCAAATGAAACGTTCAATTGAAGCCAAAGATAGGATGCTCAGTGTCCTTTCAGAGAAAATAAGCTCTTATGTAGCATTGTTTGATTCAATAGAGAAGGAGGCGTTTTCTATCAAGCAAATTGTGGATAAAGTCCAGAACGTTGTCAATGATAGAGAGGAAGTTGTGGCCGGCTTGAGAAACAAAATGGATTGGGTCTCTGCATTTGAAAAAGAATTTGTTGAAAATATCTCTGATCTAAGAAATAAACTGGAAAACAATGAGTCTGAATTAAGAAGAAAGGATAGAATCATCTCAGAACTTGAAGCAAAGCTGGATGTGGCAAAAGTTTGCAACCATAACCAAGCTCAAATGGAAGATATTCAGAAAACTTTATCTGCAAAGGATGCGGAGATACATAATTTAATTTCAGACAAAGAGGTTTTACATTATGAAGTTGGAAGCTTAAGACTTGTCTTACAGAGGATTCAGGATACTGTAACAAATATGAATGAAGAGGACAAAAGGTTATTCTCATCAATTTTGCAACATAAAGAAGCAATTATAACGGATATGGACATTGTAGGTAACGGGATGGAAGATGTTCAAAACAACGAAGAGAAGGCTCAGGAACCTACTTGA

>Glyma02g02927.2   sequence type=CDS   gene model=Glyma02g02927   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGCTCAAGCTTTCGAAGCTGAAGCTCCAACTACAAGCCCTCGTCGCCGAAGCTCGAGATCTCAGGGACAGGGAACGCTCCGCCACCGAGCAGCTCCACCTTCTAATCCAGAAGCTGAAGCGGAACGAGGAGGAGTGCGGCAGAAAGATACAGGAATTGCTGGACGAGTTGGCTTCTGTTAAAGAGGAGCGCCAGAAACTGGAGAGAAAGGTGATTTATCTTGAGAACGATAATGTGCTGCTTGAGAACAAGCAGAAAGAGTTGAAGGGAACGCTGAATAATTTACTTCAGTCTAGGGAAAACTTTGTGAATGCTTACGAGGAATCTACTTCTCAAATGAAACGTTCAATTGAAGCCAAAGATAGGATGCTCAGTGTCCTTTCAGAGAAAATAAGCTCTTATGTAGCATTGTTTGATTCAATAGAGAAGGAGGCGTTTTCTATCAAGCAAATTGTGGATAAAGTCCAGAACGTTGTCAATGATAGAGAGGAAGTTGTGGCCGGCTTGAGAAACAAAATGGATTGGGTCTCTGCATTTGAAAAAGAATTTGTTGAAAATATCTCTGATCTAAGAAATAAACTGGAAAACAATGAGTCTGAATTAAGAAGAAAGGATAGAATCATCTCAGAACTTGAAGCAAAGCTGGATGTGGCAAAAGTTTGCAACCATAACCAAGCTCAAATGGAAGATATTCAGAAAACTTTATCTGCAAAGGATGCGGAGATACATAATTTAATTTCAGACAAAGAGGTTTTACATTATGAAGTTGGAAGCTTAAGACTTGTCTTACAGAGGATTCAGGATACTGTAACAAATATGAATGAAGAGGACAAAAGGTTATTCTCATCAATTTTGCAACATAAAGAAGCAATTATAACGGATATGGACATTGTAGGTAACGGGTAA

Predicted protein sequences of Glyma02g02927

Limit To All Plant Sequences

>Glyma02g02927.1   sequence type=predicted peptide   gene model=Glyma02g02927   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLKLSKLKLQLQALVAEARDLRDRERSATEQLHLLIQKLKRNEEECGRKIQELLDELASVKEERQKLERKVIYLENDNVLLENKQKELKGTLNNLLQSRENFVNAYEESTSQMKRSIEAKDRMLSVLSEKISSYVALFDSIEKEAFSIKQIVDKVQNVVNDREEVVAGLRNKMDWVSAFEKEFVENISDLRNKLENNESELRRKDRIISELEAKLDVAKVCNHNQAQMEDIQKTLSAKDAEIHNLISDKEVLHYEVGSLRLVLQRIQDTVTNMNEEDKRLFSSILQHKEAIITDMDIVGNGMEDVQNNEEKAQEPT*

>Glyma02g02927.2   sequence type=predicted peptide   gene model=Glyma02g02927   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELLKLSKLKLQLQALVAEARDLRDRERSATEQLHLLIQKLKRNEEECGRKIQELLDELASVKEERQKLERKVIYLENDNVLLENKQKELKGTLNNLLQSRENFVNAYEESTSQMKRSIEAKDRMLSVLSEKISSYVALFDSIEKEAFSIKQIVDKVQNVVNDREEVVAGLRNKMDWVSAFEKEFVENISDLRNKLENNESELRRKDRIISELEAKLDVAKVCNHNQAQMEDIQKTLSAKDAEIHNLISDKEVLHYEVGSLRLVLQRIQDTVTNMNEEDKRLFSSILQHKEAIITDMDIVGNG*

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