Glyma02g02890 - SoyBase

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Report for Sequence Feature Glyma02g02890

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2173314
stop:	2175104
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10380	AT	Annotation by Michelle Graham. TAIR10: Putative membrane lipoprotein \| chr1:3400706-3402110 FORWARD LENGTH=305	SoyBase	E_val: 1.00E-95	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_G7K8A0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Wall-associated receptor kinase-like protein n=1 Tax=Medicago truncatula RepID=G7K8A0_MEDTR	SoyBase	E_val: 4.00E-177	ISS
UniRef100_I1JBT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBT6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02890

Paralog	Evidence	Comments
Glyma01g04670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g024900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02890

Limit To All Plant Sequences

>Glyma02g02890.1   sequence type=CDS   gene model=Glyma02g02890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCACCAACCCTTCACTTCTTCTCTCCATTTTCCTTCTACTACTTCCTTCTCTGATCTCATCACAAATCTGCCAGAGAAACTGTGGCAAAGAAACTCTCAAGTACCCTTTTGGAAGTGGCCCTGGTTGTGGTGACCCTCGTTTCCAACCACATGTAACATGTAGCAACCAAAAGCTCACATTCACCACTCACACAGGCTCCTACCCTATTACCTCAATTGACTACACAAACCAAATCATACACATCTCAGATCCCACCATGTCAACATGCTCCTGCACTGTCCCTAGCAAAGGCTTTGGCCTAAACTGGGATGCACCATTTACTTTTGCTGATAGCACCATCTTTGCTCTGGTGGATTGCTCAATGAACTCATCATCTATATGTCAATCAAATGGCTATGATGATGGGAGCAATTCCAATTCCAAGCTTTTATGTGATCAAGAGACACCAATTTGTAGTCTTCTATACTCATGCAGGCCTATTAGCACCACCATTAACCTTCCAATCTCGACGTGCTGCGTTTACACGCCGGTTAATCTCGGTCCAGCGTTTGAGATGGATCTGCAGAAGCTGCAATGCCCTTCTTACACGGGGTTCTACAACTTCAATGATCAAGAAATGGATCCTGAGAAGTGGAACTATGGTATAGCACTCAAGTACAAGTTCAGTGTCACAAATGACTATCCTGGCTCGTGTGATGCTTGTGAAAGGAGCCATGGGGTGTGTGGGTATGGTGGGACCTATAACTCTTTTATCTGCAATTGTCCTAATGGGATTAACACTACAGCGGATTGTTTCTTCATATCTTCTTATAACAATGGTTTTCGAAATGGGGTTGCTTGGTTGATCTATCCTGTGGCATGTTCTCTTGTTTGGTTCTTCTTGTAA

Predicted protein sequences of Glyma02g02890

Limit To All Plant Sequences

>Glyma02g02890.1   sequence type=predicted peptide   gene model=Glyma02g02890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFTNPSLLLSIFLLLLPSLISSQICQRNCGKETLKYPFGSGPGCGDPRFQPHVTCSNQKLTFTTHTGSYPITSIDYTNQIIHISDPTMSTCSCTVPSKGFGLNWDAPFTFADSTIFALVDCSMNSSSICQSNGYDDGSNSNSKLLCDQETPICSLLYSCRPISTTINLPISTCCVYTPVNLGPAFEMDLQKLQCPSYTGFYNFNDQEMDPEKWNYGIALKYKFSVTNDYPGSCDACERSHGVCGYGGTYNSFICNCPNGINTTADCFFISSYNNGFRNGVAWLIYPVACSLVWFFL*

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