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Report for Sequence Feature Glyma02g02880

Feature Type:gene_model
Chromosome:Gm02
Start:2166473
stop:2167903
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g02880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10370AT Annotation by Michelle Graham. TAIR10: Glutathione S-transferase family protein | chr1:3397274-3398273 REVERSE LENGTH=227 SoyBaseE_val: 3.00E-84ISS
GO:0006749GO-bp Annotation by Michelle Graham. GO Biological Process: glutathione metabolic process SoyBaseN/AISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009704GO-bp Annotation by Michelle Graham. GO Biological Process: de-etiolation SoyBaseN/AISS
GO:0015824GO-bp Annotation by Michelle Graham. GO Biological Process: proline transport SoyBaseN/AISS
GO:0048527GO-bp Annotation by Michelle Graham. GO Biological Process: lateral root development SoyBaseN/AISS
GO:0060416GO-bp Annotation by Michelle Graham. GO Biological Process: response to growth hormone stimulus SoyBaseN/AISS
GO:0080148GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of response to water deprivation SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004364GO-mf Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity SoyBaseN/AISS
KOG0406 KOG Glutathione S-transferase JGI ISS
PTHR11260Panther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING JGI ISS
PTHR11260:SF16Panther GLUTATHIONE S-TRANSFERASE THETA JGI ISS
PF00043PFAM Glutathione S-transferase, C-terminal domain JGI ISS
PF02798PFAM Glutathione S-transferase, N-terminal domain JGI ISS
UniRef100_I1JBT5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBT5_SOYBN SoyBaseE_val: 4.00E-168ISS
UniRef100_Q9FQF3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 5 n=1 Tax=Glycine max RepID=Q9FQF3_SOYBN SoyBaseE_val: 1.00E-121ISS

Expression Patterns of Glyma02g02880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02880
ParalogEvidenceComments
Glyma01g04690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g024800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g02880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g02880
>Glyma02g02880.1   sequence type=CDS   gene model=Glyma02g02880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCAAAGGGACTTGAGGCTTTTGGGTGCTTGGTTCAGTCCATTTGTCCTGAGGGTGCAGATTGCCCTTAACCTCAAGGGTTTGGATTATGAGGTTGTTGAAGAGACTTTGAATCCCAAAAGTGAATTGCTTCTTAAGTCCAACCCTGTGCACAAGAAAATCCCAGTTTTCTTCCATGGAGATAAAGTCATATGTGAATCTGCAATCATAGTTGAGTACATAGATGAGGTTTGGTCCAACAATGCTCTCTCCATCCTTCCACAAAATGCATATGATCGAGCTAATGCCCGATTTTGGGTTTCTTACATCGATGACAAGTGGGTTACGTCCTTGAAAAGTGTTCTACTGGCTGGAGATGACGACGAGGCAAAGAAATCACACTTTGTGGAAATGGAAGAAGCACTTGAGAGGATGGAAGAAGTGTTCAACAAGTGCAGTGAAGGAAAGACATACTTTGGAGGGGATACAATTGGAATTGTTGACATTGTTTTTGGGAGCCTTTGGAGTTGGATGAGAGTGATAGAAGAGATGAATGGAAGAAAAGTGTTTGATGAAGCAAAGAACCCTTCTTTGGCTAAATGGGCTGAAACGTTTTCTGCTGATGCTGCTGTGAAGGGTGTTCTTCCAGAGACTCACAAGCTTGTTGAGTATGCCGAGAGTCTTAAGAAAAGATGGGCTGCTGCAGCTGCAAAGTAA
Predicted protein sequences of Glyma02g02880
>Glyma02g02880.1   sequence type=predicted peptide   gene model=Glyma02g02880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQRDLRLLGAWFSPFVLRVQIALNLKGLDYEVVEETLNPKSELLLKSNPVHKKIPVFFHGDKVICESAIIVEYIDEVWSNNALSILPQNAYDRANARFWVSYIDDKWVTSLKSVLLAGDDDEAKKSHFVEMEEALERMEEVFNKCSEGKTYFGGDTIGIVDIVFGSLWSWMRVIEEMNGRKVFDEAKNPSLAKWAETFSADAAVKGVLPETHKLVEYAESLKKRWAAAAAK*






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