Glyma02g02820 - SoyBase

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Report for Sequence Feature Glyma02g02820

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2121935
stop:	2129990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27100	AT	Annotation by Michelle Graham. TAIR10: Actin cross-linking protein \| chr1:9407557-9411074 REVERSE LENGTH=519	SoyBase	E_val: 3.00E-173	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009963	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04601	PFAM	Protein of unknown function (DUF569)	JGI		ISS
UniRef100_I1JBT0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBT0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0WQH3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Actin cross-linking protein n=2 Tax=Arabidopsis thaliana RepID=Q0WQH3_ARATH	SoyBase	E_val: 2.00E-170	ISS

Expression Patterns of Glyma02g02820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02820

Paralog	Evidence	Comments
Glyma01g04730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g024200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02820

Limit To All Plant Sequences

>Glyma02g02820.1   sequence type=CDS   gene model=Glyma02g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTTTTTCACCAAAACGAGCGTGGTGAGGCTGCGGAGCCACCTGGACAAGTACCTCGTGGCGGACGCCGACGGAGCGCGGGTCCGCCAGAGCCGGAGGGGATCCGGCAGGGTAGCGCGGTGGACGGTGGAGGAGGTGATAGCCGAGGGAGGGATTAATAATAAGGTTCGCCTGAGGAGCTGCCACGGGAGGCTCTTAACGGCGACGGAGACGCCGTTTCTGTTAGGCATGACGGGGAAGACGGTGCTGCAAACGGAGTTCGAGGCGGGCGCGGATTTCAAGCACGAGTGGGAAGTCATACGCGACGGGTTTCAGGTGAGGTTGCGGAGCTGGAGCGGGAAGTTTCTGAGGGCGAACGGAGGCACGCCGCCGTGGCGCAACACCGTGACGGTGGACGAGCCGCATAGCTCGGCGACTAGGGATTGGATCCTGTGGGACGTGGAGCCTGTGGAGGCCGTGGAGGAGCTGGTGGATGAGTTTTTGTATGAGAATGACGACGTCGTTTCGTCTTTTGCTTCGGATGATGTATTATCGGTGGATTCGGAGCCGGCGTCGCCGATGTCGGTTTTCTCTCTCAGTTCGCCGCCGGCGAGACGGAACTCCAAGCTGATGCTGATGCAGACAATAAGTTCGAACAAGTTCAGGACTGGCATGGACTTCTTTCACCGCGCGAAGGCGGTGCGCCTCCGCAGCCACCACGACAAGTACCTCCTCGCGGAGGACGACGAGGATTCGGTGACGCAGGACCGCAAAGGCTCCTCGAAAAGCGCGCGGTGGACGGTAGAATACGTGGCTGAATACGATAACATAATTCGCCTGAAGAGCTGTTACGGCAAGTACCTCACCGCCTCCAACCACCGCTTCCTCTTGGGCATGACCGGCCACCAGGTCCTCCAGACGCTTCCTTCGAGGCTAGACTCTTCTGTTGAGTGGGAGCCCGTCAAGGAAGGAGGGCGCGTGAAGCTCAAGACTCGTTACGGGAATTTTCTCAGAGCTAACGGCGGGTTGCCGCCGTGGAGAAACTCCGTTACGCATGATATTCCGCACAGGACCGCCACGCAGGATTGGATCCTATGGGACGTGGATGTTGTTGAGATTTATGTGAACTCTCCCGCGAGTCATGATAGACCCTCCGCTCCGCCGTTGCCGGTTGAGGACTCTGTTCCCATACTAACGAGCGCACAGGTGCCGCCGCCGCCAACTGTTTCTGCTAGCTTTTCAAGGCAACAGTCCAATGATTTGTCACCTAAGGTGGAAGGGAGAACTATATACTACCATATTGCTGAAGACAATGGAGAGGTGTTGGATGAAGGCGTGCAGGGGTATTCTTTGATTTTCAAAGGGAATGGAGTTGAAGAATTGACTCGAAAGTTTGAGGAAGAAACAGGGCTAGAGGGAATCATTGTGTGTAATCGGAGTCCATTGAATGGAAAGCTTTATCCTCTTCGCTTGCAGCTTCCTCCAAACACTGTCACCATGCGGGTTGTTTTGGTTCTTCCCATGTCAAATTTGGCAAGAGACTTTGAGGAACAAGGCTTACTGTGA

Predicted protein sequences of Glyma02g02820

Limit To All Plant Sequences

>Glyma02g02820.1   sequence type=predicted peptide   gene model=Glyma02g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEFFTKTSVVRLRSHLDKYLVADADGARVRQSRRGSGRVARWTVEEVIAEGGINNKVRLRSCHGRLLTATETPFLLGMTGKTVLQTEFEAGADFKHEWEVIRDGFQVRLRSWSGKFLRANGGTPPWRNTVTVDEPHSSATRDWILWDVEPVEAVEELVDEFLYENDDVVSSFASDDVLSVDSEPASPMSVFSLSSPPARRNSKLMLMQTISSNKFRTGMDFFHRAKAVRLRSHHDKYLLAEDDEDSVTQDRKGSSKSARWTVEYVAEYDNIIRLKSCYGKYLTASNHRFLLGMTGHQVLQTLPSRLDSSVEWEPVKEGGRVKLKTRYGNFLRANGGLPPWRNSVTHDIPHRTATQDWILWDVDVVEIYVNSPASHDRPSAPPLPVEDSVPILTSAQVPPPPTVSASFSRQQSNDLSPKVEGRTIYYHIAEDNGEVLDEGVQGYSLIFKGNGVEELTRKFEEETGLEGIIVCNRSPLNGKLYPLRLQLPPNTVTMRVVLVLPMSNLARDFEEQGLL*

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