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Report for Sequence Feature Glyma02g02777

Feature Type:gene_model
Chromosome:Gm02
Start:2108021
stop:2110398
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g02777
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G20142AT Annotation by Michelle Graham. TAIR10: Toll-Interleukin-Resistance (TIR) domain family protein | chr2:8695387-8696566 FORWARD LENGTH=313 SoyBaseE_val: 5.00E-44ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF344Panther JGI ISS
PF01582PFAM TIR domain JGI ISS
UniRef100_C6ZS34UniRef Annotation by Michelle Graham. Most informative UniRef hit: TIR-NBS-LRR type disease resistance protein n=1 Tax=Glycine max RepID=C6ZS34_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6ZS34UniRef Annotation by Michelle Graham. Best UniRef hit: TIR-NBS-LRR type disease resistance protein n=1 Tax=Glycine max RepID=C6ZS34_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g02777
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g02777 not represented in the dataset
Glyma02g02777 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g02777 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g023800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g02777
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g02777
>Glyma02g02777.1   sequence type=CDS   gene model=Glyma02g02777   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATGGTCAACTTCCTCCTCTAGCACCCCTCATCAAAAGCATGAAGTGTTCCTCAGCTTCAGAGGTGAGGACACACGCTACACCTTCACTGGGCACCTTCATGCCTCTTTAACAAGACTCCAAGTCAACACATACATTGACTACAACCTTCAGAGAGGTGAAGAGATATCATCCTCACTTCTTAGGGCCATTGAGGAGGCAAAACTCTCAGTCGTTGTTTTCTCCAAAAACTATGGAAATTCCAAGTGGTGTCTTGATGAGCTTCTGAAAATACTTGAATGTAAGAATATGAGGGGGCAGATTGTGTTGCCAATTTTCTATGACATTGATCCCTCGCACGTGCGCAACCAGACGGGAACGTATGCTGAGGCATTTGCTAAACATGAGAAACACTTGCAGGGTCAAATGGACAAGGTGCAAAAGTGGAGGGTGGCTCTCAGAGAAGCAGCTAATCTCTCTGGTTGGGATTGCTCTGTCAACAGGATGGAGTCTGAACTAATCGAGAAAATTGCAAAGGATGTATTAGAAAAACTAAATCGAGTATACGTTGGCGACCTAGATCAGCAGATTGCAAAGTTAGAGCAACTTGCACAGCTTCAGCATCAATTTTTGCAAAACATACCTTCTTTGGAAAATGTGAGAAATCATAGAGCAACTGTTCAGCGTATCACGGAACTTAAAATGGAGAGAAGTGTCCGCATGCTTCGCCTCCCTCCCGACATGCTTTCACATTTGGAGAATTCAAACAATAATAATTATTTTCCTTTGTAA
Predicted protein sequences of Glyma02g02777
>Glyma02g02777.1   sequence type=predicted peptide   gene model=Glyma02g02777   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAWSTSSSSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISSSLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQTGTYAEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWDCSVNRMESELIEKIAKDVLEKLNRVYVGDLDQQIAKLEQLAQLQHQFLQNIPSLENVRNHRATVQRITELKMERSVRMLRLPPDMLSHLENSNNNNYFPL*






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