Glyma02g02650 - SoyBase

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Report for Sequence Feature Glyma02g02650

Feature Type:	gene_model
Chromosome:	Gm02
Start:	2015217
stop:	2018620
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27060	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr1:9395023-9396673 FORWARD LENGTH=386	SoyBase	E_val: 5.00E-150	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008536	GO-mf	Annotation by Michelle Graham. GO Molecular Function: Ran GTPase binding	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF23	Panther	gb def: T7N9.12	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_G7K9R0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G7K9R0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002336C21	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C21 related cluster n=1 Tax=unknown RepID=UPI0002336C21	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02650

Paralog	Evidence	Comments
Glyma01g04870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g02650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02650

Limit To All Plant Sequences

>Glyma02g02650.1   sequence type=CDS   gene model=Glyma02g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAACCGAACAAGACAGAGAACGAAGATGACAGGGACGAATCAGAACAACGAGTGTGGAGTTGGGGTGCTGGAACCGAGGGACAGTTAGGAACAAAGATTCTTCAGGATGAGCACTTCCCTCAACTCCTTCACCAATTCTCTCTCTCCTCCATCTCTTCCCTTGCCTGTGGCGGTGCTCATGTCATAGCCTTAACCTCTGCTGGAAAGGCACTATCATGGGGTAGGGGCAATTCTGGCCAACTGGGCCATGGGGAGGTTGTGAGTAACACTTTGTATCCAAAGGCTGTAACATCATTGGATGGCTATTTCATAACCCATGTCTCTGCTGGGTGGAGCCACTCTGGTTTTGTTTCAGATACTGGGTTTGTGTTCACTTGTGGGGATGGCTCCTTTGGTCAACTGGGGCATGGGGATAATGCCTCACACTGCTCTCCTGTCAAAGTGTCATGCTTTGTTGATCTGCATGTGGCACAGGTGGCATGTGGAATGCGCCATTCCCTTGTCTTGTTAAAAGATTGCTCAGGAAATCAAGTTTATGGATTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCAGCAACGATAGGGTCAAATCTGTTAATGTTCCTAAAGTTGTTAGTGGCTTTGAAGGTGTTGAAATCGTTGGAACTGCTGCCAATGGTGACCATAGTGCTGCAGTATCTGTTGATGGACATGTTTACACATGGGGAAGAGGCTTCAAGGGCTTTGAAGATGCTCATGTTCCTCAGTGCTTAAACTCTTCATTGAATTTTACCAAAGTTGCTCTGGGATGGAACCATGCTTTAGCTATGAGTGGTGAAGGGGAGGTTTATATGCTAGGTGGAAACCACCTTGGAGTGCTTAGTGATCTTCAGAATATAGGCCCTGCTAAGCATTTTCCTGATTTAAGAGAATTCAATTTGGAGAAAGTCCCTGGCCTTGATGGGACGAAGATTACTGATATTGCTGCCGGAGCTGAGCATTCTGTCATTGTCACAGAGCATGGAGAAATAAAGACATGGGGTTGGGGTGAGCATGGTCAACTTGGTTTAGGGGATACTCGCGACCAAACCAGTCCTGTTACAGTAAGTCTCGATTATGATCTGAATGAAGCTGCATCAATTAGAGTTTTCTGTGGAAGTGGGTTCACGTTTGCTGTAACCATGCCCTAG

Predicted protein sequences of Glyma02g02650

Limit To All Plant Sequences

>Glyma02g02650.1   sequence type=predicted peptide   gene model=Glyma02g02650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEPNKTENEDDRDESEQRVWSWGAGTEGQLGTKILQDEHFPQLLHQFSLSSISSLACGGAHVIALTSAGKALSWGRGNSGQLGHGEVVSNTLYPKAVTSLDGYFITHVSAGWSHSGFVSDTGFVFTCGDGSFGQLGHGDNASHCSPVKVSCFVDLHVAQVACGMRHSLVLLKDCSGNQVYGFGSGKRGQLGVSNDRVKSVNVPKVVSGFEGVEIVGTAANGDHSAAVSVDGHVYTWGRGFKGFEDAHVPQCLNSSLNFTKVALGWNHALAMSGEGEVYMLGGNHLGVLSDLQNIGPAKHFPDLREFNLEKVPGLDGTKITDIAAGAEHSVIVTEHGEIKTWGWGEHGQLGLGDTRDQTSPVTVSLDYDLNEAASIRVFCGSGFTFAVTMP*

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