Glyma02g02481 - SoyBase

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Report for Sequence Feature Glyma02g02481

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1853764
stop:	1862764
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02481

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27000	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1664) \| chr1:9374068-9376422 FORWARD LENGTH=304	SoyBase	E_val: 4.00E-95	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF07889	PFAM	Protein of unknown function (DUF1664)	JGI		ISS
UniRef100_Q0GPG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP109 n=1 Tax=Glycine max RepID=Q0GPG4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233723A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233723A related cluster n=1 Tax=unknown RepID=UPI000233723A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02481

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g02481 not represented in the dataset	Glyma02g02481 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02481

Paralog	Evidence	Comments
Glyma01g04980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02481 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g020800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02481

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g02481

Limit To All Plant Sequences

>Glyma02g02481.2   sequence type=transcript   gene model=Glyma02g02481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAATCTTGCACCATTTATGTTGATTTATAAAAGAATGTTACAATGTATGTGTATATTACACGAGGTATTCGCTCATGATTATGTTTTAAGCTCTACCCCACACAGCCCCTTCCCTTTCACGCTCTCTATCTCCTCTCTCGTGCGCCGATCTCCCTCTCCGTCTGGTGCGCCGCCGTCGTCGCTGCCGCTTGCCGATCGCTTCTTGTCGCCGCCTCCGTCAGTCCTCGAAGTTCCTGTTAACATCGAGGACAATCCTGGAGAAAGAACCATACAACTAAAGGGAAAATTCGGAGATGAGAGTAGAGACACAGTCTTGCAGAGGCAAACGAAACACAGTCGTTTAGGAAGGCGGTTCCCCTGTTCCTGTGTTTGGGTCAGTGGTCAAAGCATTTGATAGTGCAACCAAACCTAACTAACAATTAACACACCAACATCACACACATTTCTCTCTCTCGCCATGGCTATGGCTATGCAAAGCGGAATTGGAGTCTCTAAGATCCTCATCATAGCTGGAGCAGGTTATACCAGCACTGTCCTCATCAAAACTGGAAAACTCTCTGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCCGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCTCTCGTCGTTCCAGCTGCTGCCTTGGGTGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTCATGTATGTGACTAAACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACTCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTGATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATAGGTTGGCTGAATTGAGTTCTAAGCAGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCTGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCGGAAACATTGTCTGCTTCAGATAGGTCTGCTTCAGATAGTGTCATGCCAGATGGCATGGATAAACGAGAGCAACAACGAAGGCCATTGTTGAGGAATGGCATTGCTAAAACTTTGTCCGGTTTAGACAAGTCTGCTTTAGACAGTATCATGCCAAATGGTGTGGATAAACTAGAGCAACTGTGAAGGCCATTGTGGAGGTTTGAAATAGCTCATTTTTTAGTTCTTTGAATCTTCTCCCTATGTAGAAGAACGCATTGCATGCTGGGCATTCTAAATTTTGATCCTGACAGTTGTTTCCTTGGTTGTGCCTATGCTCAATCTGTTTGCATTTTTGATTCAAACATGCTTTGATTTTGCAGTAGTAGTTCAACCAAGCGTTGATGACAAGGTCTTAAATCATAATTACCAACCTTTTAAGCGTTCCTTCCTCCCTTGTTTTTATTCAGCAGTAACTTTGACTTTCAGTTCACTTGTCCATAAATCACAATATATTTGTGACAGCTATTGTGATTTTCACATTAAATTTTATCCTACATAGTATATTAATAGACTGGATAACATTATATATTCAAGCTGGTGAGTTGTGATTCTAAATTGTAAATAAACTTTTTGCTGTCAAGGTGTGTGTTGGTTTGGTGCTACCAGTTTATGCCAGATGCTTTTGGTGTGCAAGATTATGACTTCTGTTGTATTTGTTTTACCATAATTGTGATTGCCTTCGACTATGAGGTGGATGTGGCATCATGAATTAATGATTTATGAACATCGTCGACAGCTTTATACAAGTTAACTTTTTATGAAGCTTAGTGAGGTTTCCAGTCAGCAATTTAAGTTGTATATATTCATGTTAATTGGTAATCAAGTTAAATCGAAACAGG

Coding sequences of Glyma02g02481

Limit To All Plant Sequences

>Glyma02g02481.1   sequence type=CDS   gene model=Glyma02g02481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGGCTATGCAAAGCGGAATTGGAGTCTCTAAGATCCTCATCATAGCTGGAGCAGGTTATACCAGCACTGTCCTCATCAAAACTGGAAAACTCTCTGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCCGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCTCTCGTCGTTCCAGCTGCTGCCTTGGGTGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTCATGTATGTGACTAAACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACTCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTGATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATAGGTTGGCTGAATTGAGTTCTAAGCAGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCTGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCGGAAACATTGTCTGCTTCAGATAGGTCTGCTTCAGATAGTGTCATGCCAGATGGCATGGATAAACGAGAGCAACAACGAAGGCCATTGTTGAGGAATGGCATTGCTAAAACTTTGTCCGGTTTAGACAAGTCTGCTTTAGACAGTATCATGCCAAATGGTGTGGATAAACTAGAGCAACTGTGA

>Glyma02g02481.2   sequence type=CDS   gene model=Glyma02g02481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATGGCTATGCAAAGCGGAATTGGAGTCTCTAAGATCCTCATCATAGCTGGAGCAGGTTATACCAGCACTGTCCTCATCAAAACTGGAAAACTCTCTGATTTAATCGGCGAGCTTCAGTTGCTGGTGAAGGGATTGGAAAAATCCGGGGAGCATGCTGAAGGTGAAGGTGAATATGCTGATGCCATAGCTGCTCAGGTGCGTCGCCTGGCGAATGAAGTTCGGCAGCTAGCATCAAACAGGCCAATCACAGTACTGAATGGGGGTTCTGAACAAAGTAATTTATCATCTCTCGTCGTTCCAGCTGCTGCCTTGGGTGCTCTGGGTTATGGCTACATGTGGTGGAAGGGAATTTCATTCTCAGATCTCATGTATGTGACTAAACGGAATATGGAAAAAGCTGTTGCAGATTTAACCAAAAAGTTGCAGCATGCCTCAGATGTCATTGCTGATACCAAGAAGCATTTGACTCAGAGAATTCAGAATTTGAATGACAAAATGCTCAAGCTGAATGAGTTGCAAAGGTCAACTAAGGATGAAGTTGCTGGAGTTAGAAGTACTATTACTGATATCCATGAAGACTTGGGTTATTTGCAACAAACAGTGGAAACATTGGATTATAGGTTGGCTGAATTGAGTTCTAAGCAGGATTATGCAAATTATGGATTGTCATATCTCATCGACTATGTACACGGAAAAAGCCAGAAAAAGCCTGAATTGTTGCAGGAGCAACTGAAACTTTCAGGGAAGTCCCCTAATTTGATCACATATAAAGGAACTCCAAATCTAATGGGTCTTAAAGACATTGCGGAAACATTGTCTGCTTCAGATAGGTCTGCTTCAGATAGTGTCATGCCAGATGGCATGGATAAACGAGAGCAACAACGAAGGCCATTGTTGAGGAATGGCATTGCTAAAACTTTGTCCGGTTTAGACAAGTCTGCTTTAGACAGTATCATGCCAAATGGTGTGGATAAACTAGAGCAACTGTGA

Predicted protein sequences of Glyma02g02481

Limit To All Plant Sequences

>Glyma02g02481.1   sequence type=predicted peptide   gene model=Glyma02g02481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAMQSGIGVSKILIIAGAGYTSTVLIKTGKLSDLIGELQLLVKGLEKSGEHAEGEGEYADAIAAQVRRLANEVRQLASNRPITVLNGGSEQSNLSSLVVPAAALGALGYGYMWWKGISFSDLMYVTKRNMEKAVADLTKKLQHASDVIADTKKHLTQRIQNLNDKMLKLNELQRSTKDEVAGVRSTITDIHEDLGYLQQTVETLDYRLAELSSKQDYANYGLSYLIDYVHGKSQKKPELLQEQLKLSGKSPNLITYKGTPNLMGLKDIAETLSASDRSASDSVMPDGMDKREQQRRPLLRNGIAKTLSGLDKSALDSIMPNGVDKLEQL*

>Glyma02g02481.2   sequence type=predicted peptide   gene model=Glyma02g02481   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAMAMQSGIGVSKILIIAGAGYTSTVLIKTGKLSDLIGELQLLVKGLEKSGEHAEGEGEYADAIAAQVRRLANEVRQLASNRPITVLNGGSEQSNLSSLVVPAAALGALGYGYMWWKGISFSDLMYVTKRNMEKAVADLTKKLQHASDVIADTKKHLTQRIQNLNDKMLKLNELQRSTKDEVAGVRSTITDIHEDLGYLQQTVETLDYRLAELSSKQDYANYGLSYLIDYVHGKSQKKPELLQEQLKLSGKSPNLITYKGTPNLMGLKDIAETLSASDRSASDSVMPDGMDKREQQRRPLLRNGIAKTLSGLDKSALDSIMPNGVDKLEQL*

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