Glyma02g02460 - SoyBase

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Report for Sequence Feature Glyma02g02460

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1848249
stop:	1851481
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14420	AT	Annotation by Michelle Graham. TAIR10: Pectate lyase family protein \| chr1:4931844-4933405 REVERSE LENGTH=459	SoyBase	E_val: 0	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0030570	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity	SoyBase	N/A	ISS
PF00544	PFAM	Pectate lyase	JGI		ISS
PF04431	PFAM	Pectate lyase, N terminus	JGI		ISS
UniRef100_G7K9T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase n=1 Tax=Medicago truncatula RepID=G7K9T3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JBP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JBP5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g02460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g020600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02460

Limit To All Plant Sequences

>Glyma02g02460.1   sequence type=CDS   gene model=Glyma02g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAAATGCATAATTTCTTCCTTTTAACGTGTTTGATAGTCATCATACCTACCTTGCATGCCAATGTCAAGGAGGATGAAATATATTGGAAGAGGCAAAGTCAAATACTTAATGATTCATATTGGAAGCAAAAAGCATCAGTTGCAGAAAAAGAGAACAAACAAGCTTATACTTCTGACCCATATTCACTCACCAAGAACTTGACCTATAGTGTTAGCGAAATCATAGTTGGTGAGCAGAATGGAAGAAGGAATTTGAAGGGAAAAGGTGGTAATTGTATGGCAACAAACCCAATCGACAGGTGCTGGAGGTGTGACCCCAATTGGGCAAACAACCGAAAGAAGCTTGCAAATTGTGTGCAAGGTTTTGGCAGAAACACTGTTGGTGGAAAGAATGGTCCATTCTATGTGGTGACCAGTAATTTAGATAATGACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCAGTTACAAGAACCGGACCCTTGTGGATCATCTTTGCTCATAGCATGAAGATTAGGCTCAATCAGGAGCTCATTATGGCAAGTGACAAGACCATTGACGGAAGAGGAGTTGATGTCTACCTTGCTGGTGGGGCTGGTATTACCATCCAGTTCATCAAGAATGTGATCATCCATGGAGTCAAGATTTTTGACATTCAGGTTGGTAATGGTGGACTTATTATAGATTCTGAGAACCACTATGGTTTGAGGACTATGAGTGATGGAGATGGCATTTCCATCTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAAATGCAAAGATGGATTGATAGATGCTATTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTATGATGGTGATACGATAATGCAAATCACATTGGCATTCAACCACTTTGGCAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAATAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATTATTAGTGAGGGCAACAGATTCATTGCCCCTGACAACATTAATGCTAAAGAGATAACAAAGAGGGAGTACTCACCAGAGCAAGAGTGGAAAAGCTGGCAATGGAGATCAATCAATGACGAGTACCTGAACGGAGGATTTTTCAGAGAAGGTGGTGCTCAACTAACAGACAGGCCATACTCAAGGCATGACATGATGACAGCAAGGCCTGGATCATACGTGGGAAGACTCACTCGTTATGCTGGAAGCCTTAAGTGCATGGTGGGAAAGCCTTGTTAA

Predicted protein sequences of Glyma02g02460

Limit To All Plant Sequences

>Glyma02g02460.1   sequence type=predicted peptide   gene model=Glyma02g02460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKMHNFFLLTCLIVIIPTLHANVKEDEIYWKRQSQILNDSYWKQKASVAEKENKQAYTSDPYSLTKNLTYSVSEIIVGEQNGRRNLKGKGGNCMATNPIDRCWRCDPNWANNRKKLANCVQGFGRNTVGGKNGPFYVVTSNLDNDMVNPVPGTLRHAVTRTGPLWIIFAHSMKIRLNQELIMASDKTIDGRGVDVYLAGGAGITIQFIKNVIIHGVKIFDIQVGNGGLIIDSENHYGLRTMSDGDGISIFGSSNIWIDHVSMRKCKDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYDGDTIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNINAKEITKREYSPEQEWKSWQWRSINDEYLNGGFFREGGAQLTDRPYSRHDMMTARPGSYVGRLTRYAGSLKCMVGKPC*

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