SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G14420 | AT | Annotation by Michelle Graham. TAIR10: Pectate lyase family protein | chr1:4931844-4933405 REVERSE LENGTH=459 | SoyBase | E_val: 0 | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009827 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| GO:0030570 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectate lyase activity | SoyBase | N/A | ISS |
| PF00544 | PFAM | Pectate lyase | JGI | ISS | |
| PF04431 | PFAM | Pectate lyase, N terminus | JGI | ISS | |
| UniRef100_G7K9T3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pectate lyase n=1 Tax=Medicago truncatula RepID=G7K9T3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JBP5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JBP5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g02460 not represented in the dataset |
Glyma02g02460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g020600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g02460.1 sequence type=CDS gene model=Glyma02g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAAATGCATAATTTCTTCCTTTTAACGTGTTTGATAGTCATCATACCTACCTTGCATGCCAATGTCAAGGAGGATGAAATATATTGGAAGAGGCAAAGTCAAATACTTAATGATTCATATTGGAAGCAAAAAGCATCAGTTGCAGAAAAAGAGAACAAACAAGCTTATACTTCTGACCCATATTCACTCACCAAGAACTTGACCTATAGTGTTAGCGAAATCATAGTTGGTGAGCAGAATGGAAGAAGGAATTTGAAGGGAAAAGGTGGTAATTGTATGGCAACAAACCCAATCGACAGGTGCTGGAGGTGTGACCCCAATTGGGCAAACAACCGAAAGAAGCTTGCAAATTGTGTGCAAGGTTTTGGCAGAAACACTGTTGGTGGAAAGAATGGTCCATTCTATGTGGTGACCAGTAATTTAGATAATGACATGGTGAATCCTGTTCCTGGTACCCTTAGGCATGCAGTTACAAGAACCGGACCCTTGTGGATCATCTTTGCTCATAGCATGAAGATTAGGCTCAATCAGGAGCTCATTATGGCAAGTGACAAGACCATTGACGGAAGAGGAGTTGATGTCTACCTTGCTGGTGGGGCTGGTATTACCATCCAGTTCATCAAGAATGTGATCATCCATGGAGTCAAGATTTTTGACATTCAGGTTGGTAATGGTGGACTTATTATAGATTCTGAGAACCACTATGGTTTGAGGACTATGAGTGATGGAGATGGCATTTCCATCTTTGGCTCTAGCAATATTTGGATTGACCATGTTTCCATGAGAAAATGCAAAGATGGATTGATAGATGCTATTCAGGGTTCCACTGCTATTACCATCTCCAATAGCCATTTCACAGACCACAATGAGGTGATGTTGTTTGGTGCTAGTGACAGCTATGATGGTGATACGATAATGCAAATCACATTGGCATTCAACCACTTTGGCAAGAGATTAGTCCAAAGGATGCCAAGGTGCAGATATGGTTTTGTCCATGTGGTTAATAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCAAGCATCCTACCATTATTAGTGAGGGCAACAGATTCATTGCCCCTGACAACATTAATGCTAAAGAGATAACAAAGAGGGAGTACTCACCAGAGCAAGAGTGGAAAAGCTGGCAATGGAGATCAATCAATGACGAGTACCTGAACGGAGGATTTTTCAGAGAAGGTGGTGCTCAACTAACAGACAGGCCATACTCAAGGCATGACATGATGACAGCAAGGCCTGGATCATACGTGGGAAGACTCACTCGTTATGCTGGAAGCCTTAAGTGCATGGTGGGAAAGCCTTGTTAA
>Glyma02g02460.1 sequence type=predicted peptide gene model=Glyma02g02460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKMHNFFLLTCLIVIIPTLHANVKEDEIYWKRQSQILNDSYWKQKASVAEKENKQAYTSDPYSLTKNLTYSVSEIIVGEQNGRRNLKGKGGNCMATNPIDRCWRCDPNWANNRKKLANCVQGFGRNTVGGKNGPFYVVTSNLDNDMVNPVPGTLRHAVTRTGPLWIIFAHSMKIRLNQELIMASDKTIDGRGVDVYLAGGAGITIQFIKNVIIHGVKIFDIQVGNGGLIIDSENHYGLRTMSDGDGISIFGSSNIWIDHVSMRKCKDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYDGDTIMQITLAFNHFGKRLVQRMPRCRYGFVHVVNNDYTHWEMYAIGGSKHPTIISEGNRFIAPDNINAKEITKREYSPEQEWKSWQWRSINDEYLNGGFFREGGAQLTDRPYSRHDMMTARPGSYVGRLTRYAGSLKCMVGKPC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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