SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69830 | AT | Annotation by Michelle Graham. TAIR10: alpha-amylase-like 3 | chr1:26288518-26293003 REVERSE LENGTH=887 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0005983 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch catabolic process | SoyBase | N/A | ISS |
| GO:0007623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: circadian rhythm | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004556 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| KOG0471 | KOG | Alpha-amylase | JGI | ISS | |
| PTHR10357 | Panther | AMYLASE | JGI | ISS | |
| PTHR10357:SF9 | Panther | ALPHA-XYLOSIDASE-RELATED | JGI | ISS | |
| PF00128 | PFAM | Alpha amylase, catalytic domain | JGI | ISS | |
| PF07821 | PFAM | Alpha-amylase C-terminal beta-sheet domain | JGI | ISS | |
| UniRef100_B9S2B5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-amylase, putative n=1 Tax=Ricinus communis RepID=B9S2B5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002336C1B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336C1B related cluster n=1 Tax=unknown RepID=UPI0002336C1B | SoyBase | E_val: 0 | ISS |
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Glyma02g02450 not represented in the dataset |
Glyma02g02450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g020500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g02450.1 sequence type=CDS gene model=Glyma02g02450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCACCGTTGCATTAGAGACTCTCTTCCCTCTTTGCCGTAGAAAACCTTCATTTCACCGCCATAAACCAATCCCTCTCAGACCCTTCTTTGTGACTTGCTCTTCCAACCTCAATGATGATGCATCCTTCATCTTCCACCAACAACCTCGCAAAACTCTCTCTCCCGTGCATGCAGTTTCCCACACAGACACATCTGTCCTCCACTCCCTTCAATGCCCTCACACCATCACCAACACTTTCCTAATCAACACAACCGAAACGGTGGAGGGAAAGATTTTTGTGAGATTAGATCACGGAAAGGGTTTGAGGGATCGGGAGCTTACGGTGGGTTGCAATCTTCCCGGAAAATGGATTCTTCATTGGGGAGTTACCTATGTTGATGATGTTGGAAGGGAATGGGATCAACCTCCTCGTGATATGATACCCCCCGGATCTATTCTTATAAAGGACTATGCAATAGAGACCCCTTTGAAGGAGTCATCCTTATCCGCCGAAGGAGATACGCTTCACGAAATCAGGATTGATCTTAAAGCCAACAATGGAATTGCAGCGATTAATTTTGTTCTCAAGGATGAGGAAACCGAAGCTTGGTACAAAAACAAAAGAAGAGATTTCAAGGTTTCTTTGGTCAACAACCTTAAGGAGGATAATAGCATAATTGGACCTAAATGGGGCTTTGATTTATGGCCAGGGAATTTGGGACAGATATCTAAAATGTTCCTCCAGTCAGAAGAAGCTGACCAAGATGACAGCAGTGAATCTAGAGTTCCAGAGCAAGACAATAATCAACCAGAAAGTTTTTGTGAAGAAGTGCCTATAACAAAGAAGGTTTTAGTCCAAAACTCTATCAGTGTCTCCACCACAAAATGCCATGAGTCTGGGGCAGTTAAGGAACTTTTACTTTTGGAAACTGATCTACCTGGAGATGTTGTCCTTCACTGGGGAGTTTGTAGGGATGATTCGAGAAAGTGGGAAGTTCCACCTCGTCCTCATCCACCAGGAACAGTAGCATTTAAAGAAAGGGCTTTGAGAACTCAATTTCGGCCAAGAGATGATGGAAAAGGATCTTTAGCACTAATCACTTTAGAGGAAGAATTTTCAGGCTTTATGTTTGTTCTTAAGCAAAATGAAAATACTTGGTTCAAGTACAATGGACATGATTTTTATATCCCCCTCTCAAGTTCTAGTAGCTTTCTTAATAGTGGCAACAAAGAGGGCCAGTCAGAAGACAATTCCTCTGAGAAGATTCAAAGGACAAAATCAAAAATGGCACAACGAAGCATTTTTCAAGAAATTGAAAGGCTGGCTGCTGAAGCCTATAATATATTCAGAATCTCCATTCCAACTTTCTCTGAGGAAACTGCTGCAGAACCTGAGGTAACTATTGTGGAACCTGAGACAAGTATTGTGGAACCTCAGGCAACAACTATTGTGATACCTGAGACTTCAGTGGAATCAGAGACACAGTCCCTGGATCCAAAAATATGCTCAGGAACAGGCACAGGGTATGAAATATTATGCCAAGCGTTTAACTGGGAATCTCACAAATCTGGAAGATGGTACATAGAGCTTAAAGAAATGGCTTCAGAACTAGCATCACTTGGTTTCACTGTGGTTTGGTTGCCACCACCTACTGAATCTGTTTCACCTGAAGGATACATGCCAAAGGATTTATATAATTTAAATTCCAGATACGGAAACATTGATGAACTGAAAGATTTGGTGAAAAGATTTCATGAAGTTGGGATCAAAGTTCTTGGAGATGCCGTTTTAAACCACCGCTGTGCTCACTATCAGAATCAAAATGGTATTTGGAACATATTTGGAGGCCCTCTTAACTGGGATGATCGTGCAGTTGTAGCTGATGATCCACATTTTCAGGGCAGGGGCAACAAGAGTAGTGGAGATAATTTTCATGCCGCTCCAAACATTGATCATTCTCAGGAGTTTGTGAGAAAGGATCTCAAAGAATGGTTATGCTGGTTGAGGAAAGAAGTTGGGTATGATGGATGGAGGCTTGACTTTGTGAGAGGATTTTGGGGTGGTTATGTAAAGGACTACATAGATGCAAGTGAACCTTATTTTTCCGTGGGAGAGTACTGGGATTCCCTCAGTTATACATATAGTGAAATGGATCATAATCAAGATGCTCATAGGCAGAGGATAATTGATTGGATCAATGCCACTAATGGTACCTCTGGTGCATTTGATGTCACAACAAAAGGAATTCTTCACCCTGCATTGGAAAGATGTGAATATTGGCGATTGTCAGATGAGAAGGGAAAGCCCCCAGGCGTTCTTGGCTGGTGGCCATCTCGAGCTGTTACGTTTATAGAGAATCATGACACTGGTTCCACCCAGGGTCATTGGAGATTTCCCAGTGGAAAACAAATGCAAGGATATGCCTACATTCTTACTCACCCAGGAACTCCATCAGTGTTTTACGACCACATTTCCTCTCACGATAAAAGTGAAATAGCAAGTCTAATATCTCTCAGGAAGAGGAACAAGATCCACTGCAGGAGTAGAGTTCAAATTAGTAAAGCAGAAAAGGATGTTTATGCAGCAATCATAGATGAGAAAGTAGCTATGAAGATTGGACCTGGACATTTTGAACCACCAAGTGACTCCCAGAAATGGTCATTAGCTATTGAGGGAAAAGACTATAAGATTTGGGAAGCATCATAA
>Glyma02g02450.1 sequence type=predicted peptide gene model=Glyma02g02450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTVALETLFPLCRRKPSFHRHKPIPLRPFFVTCSSNLNDDASFIFHQQPRKTLSPVHAVSHTDTSVLHSLQCPHTITNTFLINTTETVEGKIFVRLDHGKGLRDRELTVGCNLPGKWILHWGVTYVDDVGREWDQPPRDMIPPGSILIKDYAIETPLKESSLSAEGDTLHEIRIDLKANNGIAAINFVLKDEETEAWYKNKRRDFKVSLVNNLKEDNSIIGPKWGFDLWPGNLGQISKMFLQSEEADQDDSSESRVPEQDNNQPESFCEEVPITKKVLVQNSISVSTTKCHESGAVKELLLLETDLPGDVVLHWGVCRDDSRKWEVPPRPHPPGTVAFKERALRTQFRPRDDGKGSLALITLEEEFSGFMFVLKQNENTWFKYNGHDFYIPLSSSSSFLNSGNKEGQSEDNSSEKIQRTKSKMAQRSIFQEIERLAAEAYNIFRISIPTFSEETAAEPEVTIVEPETSIVEPQATTIVIPETSVESETQSLDPKICSGTGTGYEILCQAFNWESHKSGRWYIELKEMASELASLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGNIDELKDLVKRFHEVGIKVLGDAVLNHRCAHYQNQNGIWNIFGGPLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQEFVRKDLKEWLCWLRKEVGYDGWRLDFVRGFWGGYVKDYIDASEPYFSVGEYWDSLSYTYSEMDHNQDAHRQRIIDWINATNGTSGAFDVTTKGILHPALERCEYWRLSDEKGKPPGVLGWWPSRAVTFIENHDTGSTQGHWRFPSGKQMQGYAYILTHPGTPSVFYDHISSHDKSEIASLISLRKRNKIHCRSRVQISKAEKDVYAAIIDEKVAMKIGPGHFEPPSDSQKWSLAIEGKDYKIWEAS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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