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Report for Sequence Feature Glyma02g02441

Feature Type:gene_model
Chromosome:Gm02
Start:1831050
stop:1836108
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g02441
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14410AT Annotation by Michelle Graham. TAIR10: ssDNA-binding transcriptional regulator | chr1:4929352-4930810 REVERSE LENGTH=263 SoyBaseE_val: 4.00E-33ISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0032211GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of telomere maintenance via telomerase SoyBaseN/AISS
GO:0005697GO-cc Annotation by Michelle Graham. GO Cellular Compartment: telomerase holoenzyme complex SoyBaseN/AISS
GO:0009295GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoid SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009508GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003697GO-mf Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding SoyBaseN/AISS
GO:0042162GO-mf Annotation by Michelle Graham. GO Molecular Function: telomeric DNA binding SoyBaseN/AISS
PF08536PFAM Whirly transcription factor JGI ISS
UniRef100_I1JBN8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBN8_SOYBN SoyBaseE_val: 1.00E-57ISS
UniRef100_Q9M9S3UniRef Annotation by Michelle Graham. Most informative UniRef hit: F14L17.18 protein n=1 Tax=Arabidopsis thaliana RepID=Q9M9S3_ARATH SoyBaseE_val: 2.00E-30ISS

Expression Patterns of Glyma02g02441
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g02441 not represented in the dataset
Glyma02g02441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g02441 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g020400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g02441
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g02441
>Glyma02g02441.2   sequence type=transcript   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAATAAGGGTTTTGCTTAGGGTATTGATTATTAAGAAATTAAAATGACACGAGTCAACTATTTAACTATAAAGTATTGAATACTTTTTCTCTCTTTCCAATCTTACCCTTACACTGCGGCTTCCGTGAACGTTCTCCCTCCCTCCGCTCCCAAGTCCCAATTCCGTTCTTCCTCCACACTTCTTATTCCATTCCCTTGCTCAAACCCTTAATCTTCAATGGATCGAGCAACCTCACAATCCCAAGTTTCCATTTTGACGATAACCCACTATGCAAAACTAAGATCAAAAACCAAAGGAAGCTCTTTTGGATCATAATCACCGACAACGACGCCTCCGATGAAGAACAAAACAACCCAACAAAAACACCAAGAGTGAAGAGAGAAATTACACATAAAAAAATCGTCATCGTTCTTTGCCGCTGGGTAACACCATGTTTGTAGATATTCTCACTATCAGTGAGTGAAATGGGAACTCTAATTATCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTCGAAAAGGTAGTTTCTGTGATGTATCTTCTAGTAATTGTTAATGAACAATCCAACATATCAGCATATTGACAAATTTATGATTATTGCTTGCTTTATCTTGCGATACAAATTGGATTTTCTTTTCTCGTGAGAAGGGTATCTGATGGTGTCTTCAAACCATGAAACAAATTAAACATGTGATATGACCATATATGTTGATTCATGTGAATTAACTAAATCAGTATCCACTGTACTTGTTGAGTTTTTTTGGGATGTGTGTATGTTATGCCATAAGTAATGGCGGTATTATTTTATCCTTTTAAATCATTTTGGAAATTGTCCTTTTATGAAGCAACGAAATTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTAATTTATGTACAGGTCTATGTGCAGGTCTATGTGTTTATGATTTTGTTTATGTACAAAATTAAGGAAATTTAATCTTTGTTTTTGAATGAGCCTTGGGTTAGACATGTAGGTGACCTCACATAGTAGGATAAGGTTTTTGATGTTGTATTTTTTGAATGAGCCTTTGAGCAGACATTATCAAGTAGTCATAGTAGATTTTATGAATGATTTATTTTTTCATCCTATGACTAACGAAATTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAGGGATCACTCTTGCAATTATTTTCTCAAGACTGCAGGCAGTTACACAGCCCTGTGCTACCTTCTCAACTTTAAAATGTGTTGAATGTCTTCATCTGGTAGCACAGAATTGTTTGAGAAATTGAGTATCATTATTAGAAACTCATCTTTAATTTAATTATTTACTTATTTGTTAAAATAAATTATTTACTATTTTCCTTTTGTTTTTTTCTGTGGCTAGTGCTTTTCCTTTTTGTTTTTGAATGTAATTAGAATTTATTGACAGCGTAAAAGTTTTTTGGTACTGTAAAAAAATCTTCAATTTCTATGTATGGGAAGATCGTTGAATTTTGTATTAAATTATTTCAAGTCTTGTCTAGGGTTATAGTTAGTTGATC

>Glyma02g02441.3   sequence type=transcript   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTAAAATAAGGGTTTTGCTTAGGGTATTGATTATTAAGAAATTAAAATGACACGAGTCAACTATTTAACTATAAAGTATTGAATACTTTTTCTCTCTTTCCAATCTTACCCTTACACTGCGGCTTCCGTGAACGTTCTCCCTCCCTCCGCTCCCAAGTCCCAATTCCGTTCTTCCTCCACACTTCTTATTCCATTCCCTTGCTCAAACCCTTAATCTTCAATGGATCGAGCAACCTCACAATCCCAAGTTTCCATTTTGACGATAACCCACTATGCAAAACTAAGATCAAAAACCAAAGGAAGCTCTTTTGGATCATAATCACCGACAACGACGCCTCCGATGAAGAACAAAACAACCCAACAAAAACACCAAGAGTGAAGAGAGAAATTACACATAAAAAAATCGTCATCGTTCTTTGCCGCTGGGTAACACCATGTTTGTAGATATTCTCACTATCAGTGAGTGAAATGGGAACTCTAATTATCCTTGGTGCAAGGGATTCTTGGGAATTTTCTCATGAGACTGTTAAGTCGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAGGGATCACTCTTGCAATTATTTTCTCAAGACTGCAGGCAGTTACACAGCCCTGTGCTACCTTCTCAACTTTAAAATGTGTTGAATGTCTTCATCTGGTAGCACAGAATTGTTTGAGAAATTGAGTATCATTATTAGAAACTCATCTTTAATTTAATTATTTACTTATTTGTTAAAATAAATTATTTACTATTTTCCTTTTGTTTTTTTCTGTGGCTAGTGCTTTTCCTTTTTGTTTTTGAATGTAATTAGAATTTATTGACAGCGTAAAAGTTTTTTGGTACTGTAAAAAAATCTTCAATTTCTATGTATGGGAAGATCGTTGAATTTTGTATTAAATTATTTCAAGTCTTGTCTAGGGTTATAGTTAGTTGATC
Coding sequences of Glyma02g02441
>Glyma02g02441.1   sequence type=CDS   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTATTTTTTGAATGAGCCTTTGAGCAGACATTATCAAGTAGTCATAGTAGATTTTATGAATGATTTATTTTTTCATCCTATGACTAACGAAATTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG

>Glyma02g02441.2   sequence type=CDS   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTATTTTTTGAATGAGCCTTTGAGCAGACATTATCAAGTAGTCATAGTAGATTTTATGAATGATTTATTTTTTCATCCTATGACTAACGAAATTGAAGTTAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG

>Glyma02g02441.3   sequence type=CDS   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACTGTTAAGTCGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATGCTACTGGCCACTTATTTAGCTTAAGCGTTCTGAAAAAACCTGCGAACATGGAGGGAATTCAGGAAAGCATCTTTCTCCCTGTTACAAGGGCAGACCTAGAAGTTTTAAGGTCACTTTTCAATTGTATCATGCCATACCTTCTAGGTTGGAATGCCTTTGGAAACTCCATAAAGCCAGAGGTATATAGTCAAGTGAATAGTACCAACCCCAGATATGGAGCAGACAATGAATGGAACAGATAG
Predicted protein sequences of Glyma02g02441
>Glyma02g02441.1   sequence type=predicted peptide   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYFLNEPLSRHYQVVIVDFMNDLFFHPMTNEIEVRKVLKVEPLLDATGHLFSLSVLKKPANMEGIQESIFLPVTRADLEVLRSLFNCIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR*

>Glyma02g02441.2   sequence type=predicted peptide   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYFLNEPLSRHYQVVIVDFMNDLFFHPMTNEIEVRKVLKVEPLLDATGHLFSLSVLKKPANMEGIQESIFLPVTRADLEVLRSLFNCIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR*

>Glyma02g02441.3   sequence type=predicted peptide   gene model=Glyma02g02441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRLLSRKVLKVEPLLDATGHLFSLSVLKKPANMEGIQESIFLPVTRADLEVLRSLFNCIMPYLLGWNAFGNSIKPEVYSQVNSTNPRYGADNEWNR*






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