Glyma02g02370 - SoyBase

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Report for Sequence Feature Glyma02g02370

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1778568
stop:	1785636
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14380	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 28 \| chr1:4918279-4920761 REVERSE LENGTH=602	SoyBase	E_val: 4.00E-77	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR13140	Panther	MYOSIN	JGI		ISS
PTHR13140:SF189	Panther		JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_G7KB25	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KB25_MEDTR	SoyBase	E_val: 9.00E-139	ISS
UniRef100_UPI0002336C17	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C17 related cluster n=1 Tax=unknown RepID=UPI0002336C17	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02370

Paralog	Evidence	Comments
Glyma01g05100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g019700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02370

Limit To All Plant Sequences

>Glyma02g02370.1   sequence type=CDS   gene model=Glyma02g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTCAAGAATTTACTCTTGGGGAAGAAATCGTCTTCAAAGTCTACTTCATCAAAGAAGAATGACATTTTTAAACCTTCAATTGACAAGGATTTGCTGGTGTCGTCTGAGGTACCCGTGCCTGATCCAACCATGGATTCGTTGCAGATATCCACACCAATATCTGGAGCTAATGATTATAAAGGAGTGTTTTCCGAAAAGGAGGTAGTTAGTAGGTCATCACATGATAGGGATGTTCTTTCAACTAGAGTCAAAGAAGCTAAGGTGCAAGATGTTGCTAATTTTGGATCTCAAGAGAATCTTGAGAAACTCCAGCTTACGGAAGCAACTATAAAAGTTCAGGCTGCTTGTAGAAGTTATCTGGCTCGTCGAACATTGCAAAAACTCAAAGGTGTCATACAACTGCAAGCTTTTATTCGTGGCCACTTGGTTAGAAGACACGCTGTTTCTGCATTATATTGTGTGAAGGGAATAGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGATGCTCTGATATTGGGCTTGCAGTCCAGAAAATTCGTAAGGATACTCATTGCTCAAATTCTGTTCGGGTAGTTTCGTCCACACAGGCAGAGAAGTTGTCTGAAAATGTCTTTGTTTGCAAGCTTCTGGCTTCATCCCCATATGCAGTTCCTCTATCACTCAACAGTGATCCTGGAGAACCTAACATGGGTCAGAAGTGGCTTGACTATTGGACAAGGTCCCACTTTTGGGCATCTCTTCCTGAATTTAAAAAGAAACTTGAGTCAGTGTCTGATGAGAAAAATGGCACTTCTCAGACAGTTCAAAAGGGGCAAGTTAAAAAAATTACTCGGAAATCTCCTACTGTGAAAGCTGACAATGTCTCAAATTTAGGTTCTAACAAATCTAAACAGCATCTGAAAAAGGATTCAAGCCACCCATTGCCTTCAGCTCAGGAAAACCCACCAAAAGAAACTGAGAAAAGTAGTTTTGGAAAGACTCATGCGCATAATGCTTCAAATGGATCTGAGGTTGTTAATGAAAAAAGAAAATCCGGCAATAAAAAGATTTTGGATCATGCTGTCATTGATGTTTCAGAGCAGGGCCCAAATGCCTCTTCAGCGAAAGAGAAAGATTCGACTGTGCCAAAGTCAAAAGAGTCTGATCCTGAGAAAGGTCATGGACAGCAAACAAAAGACAAGAATGATAATGAGCCACATAATGATCCCATTGCTGTCTCAAAGACAAGTGTGAAGAAGGGTGGAAATGAAGGAATTCAAGTAGTCAGTGAGAATTTGAATGGTGGTGACAATTGTATCAGTAACAATAGCCAAAGAAGAGCTTCACTACCTGCTAACATTAATGAACAAGAGAATGAGTTATATAACACTCCTGTTACTCCAAGACTGCCCAGTTACATGGCTCCTACTGAATCTGCAAAAGCTAGGCTAAGAGGACAAGGCTCTCCAAGATTTACTACTGATTTGGTAGACAAAAACAGTGCAACCAGGCGGCATTCACTTTCATCCTCACTTAATGGCAAGTCAGGTTCATTTTCCCCGAGAGCTGAAAAGCTGATAGGCGTAAGCAGTAGAGGAGGGATAAGGTCTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA

Predicted protein sequences of Glyma02g02370

Limit To All Plant Sequences

>Glyma02g02370.1   sequence type=predicted peptide   gene model=Glyma02g02370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKGRSPGKWFKNLLLGKKSSSKSTSSKKNDIFKPSIDKDLLVSSEVPVPDPTMDSLQISTPISGANDYKGVFSEKEVVSRSSHDRDVLSTRVKEAKVQDVANFGSQENLEKLQLTEATIKVQAACRSYLARRTLQKLKGVIQLQAFIRGHLVRRHAVSALYCVKGIVKFQALARGYNVRCSDIGLAVQKIRKDTHCSNSVRVVSSTQAEKLSENVFVCKLLASSPYAVPLSLNSDPGEPNMGQKWLDYWTRSHFWASLPEFKKKLESVSDEKNGTSQTVQKGQVKKITRKSPTVKADNVSNLGSNKSKQHLKKDSSHPLPSAQENPPKETEKSSFGKTHAHNASNGSEVVNEKRKSGNKKILDHAVIDVSEQGPNASSAKEKDSTVPKSKESDPEKGHGQQTKDKNDNEPHNDPIAVSKTSVKKGGNEGIQVVSENLNGGDNCISNNSQRRASLPANINEQENELYNTPVTPRLPSYMAPTESAKARLRGQGSPRFTTDLVDKNSATRRHSLSSSLNGKSGSFSPRAEKLIGVSSRGGIRSDRSLSSSRDGTEKLIQPQWRR*

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