Glyma02g02290 - SoyBase

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Report for Sequence Feature Glyma02g02290

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1658833
stop:	1661789
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69780	AT	Annotation by Michelle Graham. TAIR10: Homeobox-leucine zipper protein family \| chr1:26259166-26260465 FORWARD LENGTH=294	SoyBase	E_val: 1.00E-120	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0048826	GO-bp	Annotation by Michelle Graham. GO Biological Process: cotyledon morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000976	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0483	KOG	Transcription factor HEX, contains HOX and HALZ domains	JGI		ISS
PTHR24326	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24326:SF222	Panther		JGI		ISS
PF00046	PFAM	Homeobox domain	JGI		ISS
PF02183	PFAM	Homeobox associated leucine zipper	JGI		ISS
UniRef100_B9S292	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9S292_RICCO	SoyBase	E_val: 2.00E-162	ISS
UniRef100_I1JBM6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JBM6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02290

Paralog	Evidence	Comments
Glyma01g05230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g019100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g02290

Limit To All Plant Sequences

>Glyma02g02290.2   sequence type=transcript   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGCATCTAGCTGCATTGCCAATTTGCCAATTCCATCATTATATTTTAAAGACAATTGTCTTTGTAAAGAAGAACCCCCCTCCTCTTGTCTCCTAAGCATAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCACCATCATCATCAACCTCCACCTTCTCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCATTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGCCAATAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGAAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAACCAAGACAAATTGCTATATGGTTCCAGAATAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAACAGCCAAGCAGACCCTTCTTTCCTCCTTCTTCTGTTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGAACTTGCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGAATCAAATCAAAGGGAGAGAGAGAGAGAGAGAGTTAATTAATTTTAAAAATTTGGATGTAGTAGTTTTTCCCTGTGAAATCAAGAGGGTGTCCATCAATTTATCACACAATACTTTATTATGATGATGAGTTCTTAAATTAAAAACCCATGTTTTGATAACTTGGTGTATAAAATAGGATATATATATATATATATATATATATCAAGTAGAAATTTTCTGGCGGGGCTTGAAAATTTTTATATGAATGAATTAAGGGCTAGTCACTTTTTTTTTCCCACTAAGTTGGTTAATGTAACAAGTTTTCTTGAAACTTGAGTAATGCAACTGCTATTTGGCGTGTAGCATGTAGCATTAAAATAACGAGAGATTCTCATTCTCTT

>Glyma02g02290.3   sequence type=transcript   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTCAAACATATCTCTCTCTCTCTCTCTCTTTCCTCCCTTCCTTCCCTCTCAACTTCATTTTCCTTTCAAATAGTAACACTAGAGAACAAAAGCTCTGGCTAGAACTTGTAATGTATATGCAAGCCATCATCATTCAGAACAATTAGTGCATCATCCTCCTTCAACTGAAGAACTTTATTTAATTTGCTCCTAAAATATTTTGTCAGAGGATGTGGTGCAGTAATCCTTTGCCATTCCTTCTTTATTTTTAAGCTTACAGCATCTGCAATCATCTCTTATTATTACTTCAAAGTGGCGATCACACTATCATTCATTCAGCTGATCTTGAAGATTTTGTGGCAGGCATAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCACCATCATCATCAACCTCCACCTTCTCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCATTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGCCAATAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGAAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAACCAAGACAAATTGCTATATGGTTCCAGAATAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAACAGCCAAGCAGACCCTTCTTTCCTCCTTCTTCTGTTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGAACTTGCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGAATCAAATCAAAGGGAGAGAGAGAGAGAGAGAGTTAATTAATTTTAAAAATTTGGATGTAGTAGTTTTTCCCTGTGAAATCAAGAGGGTGTCCATCAATTTATCACACAATACTTTATTATGATGATGAGTTCTTAAATTAAAAACCCATGTTTTGATAACTTGGTGTATAAAATAGGATATATATATATATATATATATATATCAAGTAGAAATTTTCTGGCGGGGCTTGAAAATTTTTATATGAATGAATTAAGGGCTAGTCACTTTTTTTTTCCCACTAAGTTGGTTAATGTAACAAGTTTTCTTGAAACTTGAGTAATGCAACTGCTATTTGGCGTGTAGCATGTAGCATTAAAATAACGAGAGATTCTCATTCTCTT

Coding sequences of Glyma02g02290

Limit To All Plant Sequences

>Glyma02g02290.1   sequence type=CDS   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGCATAAAACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCACCATCATCATCAACCTCCACCTTCTCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCATTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGCCAATAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGAAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAACCAAGACAAATTGCTATATGGTTCCAGAATAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAACAGCCAAGCAGACCCTTCTTTCCTCCTTCTTCTGTTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGAACTTGCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA

>Glyma02g02290.2   sequence type=CDS   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCACCATCATCATCAACCTCCACCTTCTCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCATTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGCCAATAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGAAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAACCAAGACAAATTGCTATATGGTTCCAGAATAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAACAGCCAAGCAGACCCTTCTTTCCTCCTTCTTCTGTTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGAACTTGCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA

>Glyma02g02290.3   sequence type=CDS   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCACCATCATCATCAACCTCCACCTTCTCTCACCTCAATTCTACCAACGTGTGCACCTCAAGAATATCATGGGGGAGTGACCATTCTAGGAAAGAGATCCATGTCATTTTCATCAGGGATTGAGCATGGAGAAGAGGCCAATAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAGAAGAGAAGGCTCAACATGGAGCAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAACAAGCTTGAGCCAGAGAGAAAAATGCAGCTTGCAAGAGCACTTGGCTTGCAACCAAGACAAATTGCTATATGGTTCCAGAATAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTTCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACAGAATCCATAAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGCTCAGACATCAAGTTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCATTCTACACATCAGCAACAGCCAAGCAGACCCTTCTTTCCTCCTTCTTCTGTTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCAAGACCAGAACTTGCATCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCTGGGTTTTGGCCTTGGTTGGAGCAGCAGCATTTCAATTGA

Predicted protein sequences of Glyma02g02290

Limit To All Plant Sequences

>Glyma02g02290.1   sequence type=predicted peptide   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWHKTCNEMAFFPANFMLQTPHHDDHHHHQPPPSLTSILPTCAPQEYHGGVTILGKRSMSFSSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPHSTHQQQPSRPFFPPSSVRPAGVAQLFQTSSRPELASCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN*

>Glyma02g02290.2   sequence type=predicted peptide   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFFPANFMLQTPHHDDHHHHQPPPSLTSILPTCAPQEYHGGVTILGKRSMSFSSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPHSTHQQQPSRPFFPPSSVRPAGVAQLFQTSSRPELASCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN*

>Glyma02g02290.3   sequence type=predicted peptide   gene model=Glyma02g02290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFFPANFMLQTPHHDDHHHHQPPPSLTSILPTCAPQEYHGGVTILGKRSMSFSSGIEHGEEANNAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPHSTHQQQPSRPFFPPSSVRPAGVAQLFQTSSRPELASCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN*

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