Glyma02g02260 - SoyBase

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Report for Sequence Feature Glyma02g02260

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1634250
stop:	1637093
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14340	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:4897709-4898776 FORWARD LENGTH=244	SoyBase	E_val: 8.00E-100	ISS
GO:0006301	GO-bp	Annotation by Michelle Graham. GO Biological Process: postreplication repair	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
PTHR11732	Panther	ALDO/KETO REDUCTASE	JGI		ISS
PTHR11732:SF1	Panther	DIMERIC DIHYDRODIOL DEHYDROGENASE-RELATED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9S290	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S290_RICCO	SoyBase	E_val: 2.00E-107	ISS
UniRef100_I1JBM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBM4_SOYBN	SoyBase	E_val: 4.00E-178	ISS

Expression Patterns of Glyma02g02260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g02260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g019000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g02260

Limit To All Plant Sequences

>Glyma02g02260.5   sequence type=transcript   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGCGAGGCCCAGGCCCATGATTGAACTTGACCCATGAAACTATATAATAAAACCCAAGATAGTTTTAATTTAATTCTGCTTCAGAAATCCCTGCGTGAAGAAGAAATCACTGTGTGTGATTCAATTGCATCGGTTTCTTCAATTCCAGCACCGATGAATTCTGGTGGGTACGCTGTTGAGGTTACGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTTCGTGACTTCTTTGCTTTCTCCGGTGTCATTGAGAATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACCGCTTATGTGACATTCAAAGATGCATATGCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACACTATGAAGATGAATTTGATTTTTGGAACCAGCCTTCGTATAGTCATGAGGATGAGACTGCTTCAACTACACCACAAAGCAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTTGTTAGGACCATGCTGTCAAAGGGATATGTTCTCAGCAAGGATGCACTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCCGCCACTGCAACAGCGAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTATCAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCATGGCGGCTGCATCCACAGCAGGAAGATCGGTAGCAGCGGCTGCAAACTCTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAGGTTGCTTCTGATATGGGTACTCACAGGGATAGGCAGTAAATAAAGCATTGACATGATTAAACACTATCTTTTAGATATGTCTGCTTCTGCTAAATAGCTTTTGAAACTTCAGTTAGCAATATTATTATACTTTTACAATACATAAATCCTGTTTGGATAATTTTTTGGATAAACACTTATAGAAGTAAGGTAAAATGAATTGAGCTTCTCTCGTAAGTTAAAATCAACTTATGCACTTAACTTTTATAAAAGATTTTTCATTTAACTTTTCTGAAGGCCGAAGTACATAAGTTGATTTTAGTTTATGAGAAAATCACATTTCATTTTACTTTCTTGTAAGTATTTATAGAGAAATTTATCTTAACAGGATCATAGTGCATGTAATTATGAATAAATCTAGTGTATGCCCAGACAGGATTGAACTATGAAACCCGTGCTATTTCTACCACTGAACTATTATCCTGATTCCAAACTTTACAGTACGTCGCGGTAGTAGTCAGTAAGGGGCTGAGATTGGTACATTGAAATCATTATGATTTGTTAAAAGGATAGAAATTTTATACAACACCACAATGTATTATGTCAACGTGTTACTAGAGTAATATTTTTTGCGTATCCTTTTTTTGTCAAGCTATGCACAGATGGTGGATTCAGCTATTTTGACTTCAAGTGGTTCAAAGTTATAGAGATGCTTGGGAATGAGATATTTTTTCAGAAAATGGCA

>Glyma02g02260.6   sequence type=transcript   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGGCGAGGCCCAGGCCCATGATTGAACTTGACCCATGAAACTATATAATAAAACCCAAGATAGTTTTAATTTAATTCTGCTTCAGAAATCCCTGCGTGAAGAAGAAATCACTGTGTGTGATTCAATTGCATCGGTTTCTTCAATTCCAGCACCGGTGCGTGCATCTGATTTATATAACCTTGTTTGTTCACTCTTATTTTTATGTTATGGCTATTTCATATTTGAGGTCAGCATCATAAGCAGTTGTTGTTTCGGAAACACAAGATGAATTCTGGTGGGTACGCTGTTGAGGTTACGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTTCGTGACTTCTTTGCTTTCTCCGGTGTCATTGAGAATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACCGCTTATGTGACATTCAAAGATGCATATGCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACACTATGAAGATGAATTTGATTTTTGGAACCAGCCTTCGTATAGTCATGAGGATGAGACTGCTTCAACTACACCACAAAGCAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTTGTTAGGACCATGCTGTCAAAGGGATATGTTCTCAGCAAGGATGCACTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCCGCCACTGCAACAGCGAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTATCAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCATGGCGGCTGCATCCACAGCAGGAAGATCGGTAGCAGCGGCTGCAAACTCTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAGGTTGCTTCTGATATGGGTACTCACAGGGATAGGCAGTAAATAAAGCATTGACATGATTAAACACTATCTTTTAGATATGTCTGCTTCTGCTAAATAGCTTTTGAAACTTCAGTTAGCAATATTATTATACTTTTACAATACATAAATCCTGTTTGGATAATTTTTTGGATAAACACTTATAGAAGTAAGGTAAAATGAATTGAGCTTCTCTCGTAAGTTAAAATCAACTTATGCACTTAACTTTTATAAAAGATTTTTCATTTAACTTTTCTGAAGGCCGAAGTACATAAGTTGATTTTAGTTTATGAGAAAATCACATTTCATTTTACTTTCTTGTAAGTATTTATAGAGAAATTTATCTTAACAGGATCATAGTGCATGTAATTATGAATAAATCTAGTGTATGCCCAGACAGGATTGAACTATGAAACCCGTGCTATTTCTACCACTGAACTATTATCCTGATTCCAAACTTTACAGTACGTCGCGGTAGTAGTCAGTAAGGGGCTGAGATTGGTACATTGAAATCATTATGATTTGTTAAAAGGATAGAAATTTTATACAACACCACAATGTATTATGTCAACGTGTTACTAGAGTAATATTTTTTGCGTATCCTTTTTTTGTCAAGCTATGCACAGATGGTGGATTCAGCTATTTTGACTTCAAGTGGTTCAAAGTTATAGAGATGCTTGGGAATGAGATATTTTTTCAGAAAATGGCA

Coding sequences of Glyma02g02260

Limit To All Plant Sequences

>Glyma02g02260.4   sequence type=CDS   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTATATAATAAAACCCAAGATAGTTTTAATTTAATTCTGCTTCAGAAATCCCTGCGTGAAGAAGAAATCACTGTGTGTGATTCAATTGCATCGGTTTCTTCAATTCCAGCACCGTTGTTGTTTCGGAAACACAAGATGAATTCTGGTGGGTACGCTGTTGAGGTTACGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTTCGTGACTTCTTTGCTTTCTCCGGTGTCATTGAGAATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACCGCTTATGTGACATTCAAAGATGCATATGCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACACTATGAAGATGAATTTGATTTTTGGAACCAGCCTTCGTATAGTCATGAGGATGAGACTGCTTCAACTACACCACAAAGCAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTTGTTAGGACCATGCTGTCAAAGGGATATGTTCTCAGCAAGGATGCACTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCCGCCACTGCAACAGCGAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTATCAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCATGGCGGCTGCATCCACAGCAGGAAGATCGGTAGCAGCGGCTGCAAACTCTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAGGTTGCTTCTGATATGGGTACTCACAGGGATAGGCAGTAA

>Glyma02g02260.5   sequence type=CDS   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTATATAATAAAACCCAAGATAGTTTTAATTTAATTCTGCTTCAGAAATCCCTGCGTGAAGAAGAAATCACTGTGTGTGATTCAATTGCATCGGTTTCTTCAATTCCAGCACCGATGAATTCTGGTGGGTACGCTGTTGAGGTTACGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTTCGTGACTTCTTTGCTTTCTCCGGTGTCATTGAGAATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACCGCTTATGTGACATTCAAAGATGCATATGCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACACTATGAAGATGAATTTGATTTTTGGAACCAGCCTTCGTATAGTCATGAGGATGAGACTGCTTCAACTACACCACAAAGCAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTTGTTAGGACCATGCTGTCAAAGGGATATGTTCTCAGCAAGGATGCACTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCCGCCACTGCAACAGCGAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTATCAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCATGGCGGCTGCATCCACAGCAGGAAGATCGGTAGCAGCGGCTGCAAACTCTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAGGTTGCTTCTGATATGGGTACTCACAGGGATAGGCAGTAA

>Glyma02g02260.6   sequence type=CDS   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCTGGTGGGTACGCTGTTGAGGTTACGGGTCTCTCGCCAAAAGCCACGGACAAGGATGTTCGTGACTTCTTTGCTTTCTCCGGTGTCATTGAGAATGTTGAAATTATCAGGTCTGGTGATTATGCTTGTACCGCTTATGTGACATTCAAAGATGCATATGCTCAAGAAACTGCATGCTTGCTCAGTGGAGCCACTATTTTAGATCAACGTGTATGCATAACACGCTGGGGACACTATGAAGATGAATTTGATTTTTGGAACCAGCCTTCGTATAGTCATGAGGATGAGACTGCTTCAACTACACCACAAAGCAATCAATTTGTTTCCTCTGCTGGAGAAGCAGTTACCATGGCTCAAGAAGTTGTTAGGACCATGCTGTCAAAGGGATATGTTCTCAGCAAGGATGCACTAGCTAAGGCTAAAGACTTTGACGAGTCTCATCAGGTTTCCGCCACTGCAACAGCGAAGGTTTCTGAACTGAGCCAGAGAATTGGCCTATCAGATAAGATATCTGCAGGTATTGGAGCTGTTAAATCTGTGGATCAGAGATATAATGTCTCTGAAACAACCATGGCGGCTGCATCCACAGCAGGAAGATCGGTAGCAGCGGCTGCAAACTCTTTGGTAAATAGCAGCTATTTTTCAAAAGGAGCCTTGTGGGTGTCAGGTGCTCTAACCCGAGCAGCTCAGGTTGCTTCTGATATGGGTACTCACAGGGATAGGCAGTAA

Predicted protein sequences of Glyma02g02260

Limit To All Plant Sequences

>Glyma02g02260.4   sequence type=predicted peptide   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLYNKTQDSFNLILLQKSLREEEITVCDSIASVSSIPAPLLFRKHKMNSGGYAVEVTGLSPKATDKDVRDFFAFSGVIENVEIIRSGDYACTAYVTFKDAYAQETACLLSGATILDQRVCITRWGHYEDEFDFWNQPSYSHEDETASTTPQSNQFVSSAGEAVTMAQEVVRTMLSKGYVLSKDALAKAKDFDESHQVSATATAKVSELSQRIGLSDKISAGIGAVKSVDQRYNVSETTMAAASTAGRSVAAAANSLVNSSYFSKGALWVSGALTRAAQVASDMGTHRDRQ*

>Glyma02g02260.5   sequence type=predicted peptide   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLYNKTQDSFNLILLQKSLREEEITVCDSIASVSSIPAPMNSGGYAVEVTGLSPKATDKDVRDFFAFSGVIENVEIIRSGDYACTAYVTFKDAYAQETACLLSGATILDQRVCITRWGHYEDEFDFWNQPSYSHEDETASTTPQSNQFVSSAGEAVTMAQEVVRTMLSKGYVLSKDALAKAKDFDESHQVSATATAKVSELSQRIGLSDKISAGIGAVKSVDQRYNVSETTMAAASTAGRSVAAAANSLVNSSYFSKGALWVSGALTRAAQVASDMGTHRDRQ*

>Glyma02g02260.6   sequence type=predicted peptide   gene model=Glyma02g02260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSGGYAVEVTGLSPKATDKDVRDFFAFSGVIENVEIIRSGDYACTAYVTFKDAYAQETACLLSGATILDQRVCITRWGHYEDEFDFWNQPSYSHEDETASTTPQSNQFVSSAGEAVTMAQEVVRTMLSKGYVLSKDALAKAKDFDESHQVSATATAKVSELSQRIGLSDKISAGIGAVKSVDQRYNVSETTMAAASTAGRSVAAAANSLVNSSYFSKGALWVSGALTRAAQVASDMGTHRDRQ*

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