Glyma02g02240 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma02g02240

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1593908
stop:	1598929
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13700	AT	Annotation by Michelle Graham. TAIR10: polyamine oxidase 1 \| chr5:4420222-4422974 REVERSE LENGTH=472	SoyBase	E_val: 2.00E-146	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0046592	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polyamine oxidase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG0029	KOG	Amine oxidase	JGI		ISS
PTHR10742	Panther	AMINE OXIDASE	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
UniRef100_B9RVL4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyamine oxidase, putative n=1 Tax=Ricinus communis RepID=B9RVL4_RICCO	SoyBase	E_val: 6.00E-157	ISS
UniRef100_UPI0002336C15	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336C15 related cluster n=1 Tax=unknown RepID=UPI0002336C15	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g02240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g018800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02240

Limit To All Plant Sequences

>Glyma02g02240.1   sequence type=CDS   gene model=Glyma02g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTACATTTCCAACTGTAAGCAGGAACATGAGCATTCAAGTATCTCTGCGGCAAAGCTGTTGGCCGAGAATGGCGTAAAGGATCTTGTAATCCTGGAGGCTTCAAACTGTATTGGCGGTAGGATTCGGAAGGAAAACTTCGGCGGTGTGTCCGTCGAACTCGGAGCTGGTTGGATTGTCGGAGTTGGCGGCAAAGAGTCCAATCCAATTTGGGAACTCGTCGCTGAATATGGCCTTCGAACATGCTTCTCTGACTACACGAATGTGCCATACAACATATATGATCGCAGTGGAAAGATATTTTCGAGTGGAATCGCTGCGGACTCGTACAAAAAAGCTGTGGACTCGGCAATTCGAAACTTAACGAACCAGGAAGAAGCCGATCGCCAAGGCAATAGCTCCAAAACAACTGAACCACCTTCGTCGCCATTAGAGCTAGCAATTGATTTCATCCTCCATGATTTTGAAATGGCAGAGGCAGTACCGATATCTACCTTTACAGCGTTTGGCGAAAGGGAATTTTTGGTTGCGGATGAAAGAGGTTTTGATTATTTGGTATATAAAATGGCTGAAGATTTTTTGTTGACATCTGAGGGTAAAATACTGGACACTCGTCTCAAACTCAACCATGTGGTCCGGGAAATAGAGCATCGGGGAAGTGGCGTTAGGGTGATAACAGAGGATGATTGCATTTATGAAGCAAATTACGTACTTGTGTCCGTTAGCATTGGGGTTCTCCAAAGCAACCTTGTTGCCTTCCATCCACCCTTACCCAGATGGAAATTAGAAGCCATAGAGAAATGTGATGTAACCGTGTACACCAAAATTTTCCTGAAGTTTCCATATCAGTTCTGGCCAAGTGGACCCGGAAATGAATTCTTCATATATGCTCACGATCAAAGAGGCTACTACACATTTTGGCAGGTACCTGATAAGCAGAGGTTCCTAAACCGAAAACAAAGTCAAGAGGAAAATCATCTCTGCTATAGTTATCAGCGCCGAGCACTCCCACCACCAAGTTCACAAGTAGTGCTAAGAAACTCACTATGA

Predicted protein sequences of Glyma02g02240

Limit To All Plant Sequences

>Glyma02g02240.1   sequence type=predicted peptide   gene model=Glyma02g02240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYISNCKQEHEHSSISAAKLLAENGVKDLVILEASNCIGGRIRKENFGGVSVELGAGWIVGVGGKESNPIWELVAEYGLRTCFSDYTNVPYNIYDRSGKIFSSGIAADSYKKAVDSAIRNLTNQEEADRQGNSSKTTEPPSSPLELAIDFILHDFEMAEAVPISTFTAFGEREFLVADERGFDYLVYKMAEDFLLTSEGKILDTRLKLNHVVREIEHRGSGVRVITEDDCIYEANYVLVSVSIGVLQSNLVAFHPPLPRWKLEAIEKCDVTVYTKIFLKFPYQFWPSGPGNEFFIYAHDQRGYYTFWQVPDKQRFLNRKQSQEENHLCYSYQRRALPPPSSQVVLRNSL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain