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Report for Sequence Feature Glyma02g02200

Feature Type:gene_model
Chromosome:Gm02
Start:1578361
stop:1579050
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02440AT Annotation by Michelle Graham. TAIR10: F-box family protein | chr4:1072555-1073565 FORWARD LENGTH=336 SoyBaseE_val: 7.00E-57ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0009585GO-bp Annotation by Michelle Graham. GO Biological Process: red, far-red light phototransduction SoyBaseN/AISS
GO:0010099GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of photomorphogenesis SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_B9SAQ8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phytochrome A-associated F-box protein, putative n=1 Tax=Ricinus communis RepID=B9SAQ8_RICCO SoyBaseE_val: 8.00E-61ISS
UniRef100_UPI0002337038UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337038 related cluster n=1 Tax=unknown RepID=UPI0002337038 SoyBaseE_val: 3.00E-169ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g02200 not represented in the dataset

Glyma02g02200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g02200.2   sequence type=CDS   gene model=Glyma02g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGCGTTTTCGCAGCGCTAACAGACGACATCGTCCTCTCCATTCTGGCGAAGCTAGACGACGATCCACGACACTGGGCGCGCGCGGCGTGCGTCTCCACCCGATTCTCCACCCTCATTCGCCACTTCTGCTGGAAGACCAAATGCTCCCAAACCTTCCCCTCATCTCTCATCTCCTCCGATTCCCCCTCCACCTGGTCCTCCCTCCTCAAGCTCGCCGTTTGCTGCCCCGGCCTCCGCCACGCCGGCATCCCCGCCGACCGGAACGCCGCGAAACGGATGAACATCTGCCGGAATTCGCATTTGGCCGGCGGCTATCGGCATCTGAGGAGAGAACAGGGATGCAAACTTCTCGCGAGACAGTTCCGCGACGATAATTTGTTCCTCTGCGACTGGCCCGGCTGCGTGCACTCCTATCAGAGGCGCGACTACATGCTCTTCCGAGGGTTCTTCCATAACTTCAAAGCGAGCGGGGTTTGGAGAAGCATCAGCGACGAGAAGAGAAGGAAGATCGATGTCGAGTGCGCCTTCTGCACGTGCCAGCACACGTGGGACCTCCAATCCGCCTTCTGCCTCAGACGTGGCTTCGGCTACCATCTCGATGGGGAACCAGTTGTTCGAGCTTATGTCTGTGAGAACGGTCATGTCTCTGGGGCTTGGACCAATATACCCTTGTACTCTTAG

>Glyma02g02200.2   sequence type=predicted peptide   gene model=Glyma02g02200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESVFAALTDDIVLSILAKLDDDPRHWARAACVSTRFSTLIRHFCWKTKCSQTFPSSLISSDSPSTWSSLLKLAVCCPGLRHAGIPADRNAAKRMNICRNSHLAGGYRHLRREQGCKLLARQFRDDNLFLCDWPGCVHSYQRRDYMLFRGFFHNFKASGVWRSISDEKRRKIDVECAFCTCQHTWDLQSAFCLRRGFGYHLDGEPVVRAYVCENGHVSGAWTNIPLYS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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