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Report for Sequence Feature Glyma02g02170

Feature Type:gene_model
Chromosome:Gm02
Start:1550743
stop:1554792
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g02170
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G62830AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr3:23232539-23235353 FORWARD LENGTH=445 SoyBaseE_val: 0ISS
GO:0009225GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide-sugar metabolic process SoyBaseN/AISS
GO:0019305GO-bp Annotation by Michelle Graham. GO Biological Process: dTDP-rhamnose biosynthetic process SoyBaseN/AISS
GO:0042732GO-bp Annotation by Michelle Graham. GO Biological Process: D-xylose metabolic process SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0000139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi membrane SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0008460GO-mf Annotation by Michelle Graham. GO Molecular Function: dTDP-glucose 4,6-dehydratase activity SoyBaseN/AISS
GO:0048040GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucuronate decarboxylase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG1429 KOG dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF35Panther gb def: udp-glucose 4-epimerase [bacillus halodurans] JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
UniRef100_G7IF53UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucuronic acid decarboxylase n=1 Tax=Medicago truncatula RepID=G7IF53_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JBL3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBL3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g02170
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02170
ParalogEvidenceComments
Glyma10g02290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02170 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g018000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g02170
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g02170
>Glyma02g02170.1   sequence type=CDS   gene model=Glyma02g02170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTCCGAACTGATTTTCAGAGGGCACGAGACCCAGCCCGTGGACGACGCGTACTCACCAAAGCCCCACAAACCCTGGCTCACCGTGACTCGCCCGATTCACTACATGCTCCGTGAGCAGCGACTCCTCTTCGTTCTCCTCGGCGTCATCATAGCAACCCTCTTCTTCACATTCGTCCCTTCCTCTTCCCCTTCCGCTTCCTCCTCAAGCGTTTCGTACGAGTCTCTCCCGATCTCCTACTTCGAGCGCGAGTCAAAGATTCCGGCGTACCACCACCGCGTGGCTGCGGCGGTGCATTCGGTGGGGAAGGTGCCGCTGGGGATTAAGAGGAAGGGACTCCGGATCGTAGTGACGGGCGGCGCGGGGTTCGTGGGGTCGCACCTGGTGGATCGGTTGATTGCGAGAGGGGACAGCGTGATCGTGGTGGACAATTTCTTCACGGGAAGAAAAGAGAACGTGATGCACCATTTTGGGAACCCTAGATTCGAGCTCATCCGACACGACGTCGTTGAGCCTCTCCTGCTCGAGGTTTATGGAGATCCTCTGCAGCACCCTCAGAAGGAGACTTACTGGGGCAACGTCAACCCAATTGGTGTCCGAAGCTGCTACGACGAGGGAAAGCGTACGGCCGAGACGTTGACCATGGACTACCACCGAGGTGCCGGCGTCGAGGTTAGAATTGCTAGAATCTTTAACACCTACGGGCCTAGAATGTGCTTAGATGATGGTCGTGTTGTTAGTAACTTCGTTGCTCAGGCACTAAGGAAGGAGCCTCTGACCGTTTATGGAGATGGGAAGCAGACAAGAAGTTTCCAATATGTCTCTGATTTGGTGGAGGGTCTAATCCGCCTTATGGAAGGAGAACACGTGGGACCTTTCAATCTTGGAAATCCGGGAGAATTTACAATGCTAGAACTTGCCAAGGTGGTTCAAGAAACAATCGACCCTGATGCTAGGATAGAGTACAGGCCGAACACAGAGGATGATCCGCACAAGAGAAAGCCTGATATAAGTAGGGCTAAGGATCAACTTGGCTGGGAACCCAAGGTTGATCTGCGCAAGGGCCTCCCACTAATGGTTTCTGACTTCCGGCAACGCATTTTTGGTGACCAGAAGGAAAAGGCAACCGTAGCCTAA
Predicted protein sequences of Glyma02g02170
>Glyma02g02170.1   sequence type=predicted peptide   gene model=Glyma02g02170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSELIFRGHETQPVDDAYSPKPHKPWLTVTRPIHYMLREQRLLFVLLGVIIATLFFTFVPSSSPSASSSSVSYESLPISYFERESKIPAYHHRVAAAVHSVGKVPLGIKRKGLRIVVTGGAGFVGSHLVDRLIARGDSVIVVDNFFTGRKENVMHHFGNPRFELIRHDVVEPLLLEVYGDPLQHPQKETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLIRLMEGEHVGPFNLGNPGEFTMLELAKVVQETIDPDARIEYRPNTEDDPHKRKPDISRAKDQLGWEPKVDLRKGLPLMVSDFRQRIFGDQKEKATVA*






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