Glyma02g02080 - SoyBase

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Report for Sequence Feature Glyma02g02080

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1504008
stop:	1508416
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02390	AT	Annotation by Michelle Graham. TAIR10: poly(ADP-ribose) polymerase \| chr4:1050104-1053960 FORWARD LENGTH=637	SoyBase	E_val: 3.00E-95	ISS
GO:0006302	GO-bp	Annotation by Michelle Graham. GO Biological Process: double-strand break repair	SoyBase	N/A	ISS
GO:0006471	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ADP-ribosylation	SoyBase	N/A	ISS
GO:0010332	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to gamma radiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003950	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NAD+ ADP-ribosyltransferase activity	SoyBase	N/A	ISS
PTHR15447	Panther	POLY [ADP-RIBOSE] POLYMERASE	JGI		ISS
PF00644	PFAM	Poly(ADP-ribose) polymerase catalytic domain	JGI		ISS
PF02877	PFAM	Poly(ADP-ribose) polymerase, regulatory domain	JGI		ISS
PF05406	PFAM	WGR domain	JGI		ISS
UniRef100_G7IF43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Poly n=1 Tax=Medicago truncatula RepID=G7IF43_MEDTR	SoyBase	E_val: 1.00E-137	ISS
UniRef100_I1JBK7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JBK7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g02080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02080

Paralog	Evidence	Comments
Glyma10g02220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g017200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02080

Limit To All Plant Sequences

>Glyma02g02080.2   sequence type=CDS   gene model=Glyma02g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGACCTATCGTTGCAGACTTCCACTATAATGGTGGTGACTTCCTTGTTTACAATAGATGGGAAAGCGTAGGTGTAAAGGGACAAGACAAGATACATGGCCCTTTTAAATCATGTGAGAGTGCCATTCAGGAATTTGAACAAAAGTTTTTAGCCAAGACCAAGAATGCTTGGTCCAGTAGGAATAATTTTGTTTGCTATCCTAAAAGTTATGCTTGGTTGGAAATGGACTACAGTGGCAAGGAAAATGAATCTACTGTTACAGAAAATCCTGACCATGCTTTAGGAAAGCAGCCTCAGGAATCTAAACTTGAGCCACGTGTTGCAAAATTTATATCTCTTGTTTGCAATGGCTATGAAGTTCTCAAAAGATTGGCTAATGTGATTGATAAAGGTGATAGGAAAGTTCTGAAACAATTAAGTGGAGAATTCTACACTGTAATTCCTCATGATTTTGGATTCAAAAAAGTGCGTGAGTTTGTGATCGATACCCCTCAGAAGTTAAAACGAAAGTTAGAAATGGTTGAGGCTCTTGCTGAAATTGAGGTTGCCACAAAGCTCTTGAAAGATGACGCAGAAATGCAGGGAGATCCTCTGTATACTCATTATCAACGCCTTCATTGTGAACTGGCACCAGTTGAATTTGGTTGTGTGGAATTTTCTATGATTGAAGAGTATACGAAGAACACTCATGCAGAAACACATTCAAACTATACTGTGGATATTGTTCAAATATTCAGGACATCAAGAGAAGGCGAGGCAGAACGGTTCAGAAAGCCTGCCTCCTTGTTTGATTCCACAGCTAATTCCAGTTCATTGCTTTTAAATGCACTAGTGAATCTTTCATATAGGTTCAAATATTGTGTTTTCACAAAAGGATTAGGAGGTACTGCTCTTGATCCTTCAAAAGCTCAGGAACTTGAGGATGGGCTCGTAGTTCCCCTAGGAAAGCCCAAAACAGAATCAGGCAAAAAGGGCGATCTATTGTACAATGAATACATTGTTTATAATGTGGAGCAGATTAGGATGCGCTATATTGTTCACTTAAATTTCAATTTTAAGACTACAAGTTAG

Predicted protein sequences of Glyma02g02080

Limit To All Plant Sequences

>Glyma02g02080.2   sequence type=predicted peptide   gene model=Glyma02g02080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGPIVADFHYNGGDFLVYNRWESVGVKGQDKIHGPFKSCESAIQEFEQKFLAKTKNAWSSRNNFVCYPKSYAWLEMDYSGKENESTVTENPDHALGKQPQESKLEPRVAKFISLVCNGYEVLKRLANVIDKGDRKVLKQLSGEFYTVIPHDFGFKKVREFVIDTPQKLKRKLEMVEALAEIEVATKLLKDDAEMQGDPLYTHYQRLHCELAPVEFGCVEFSMIEEYTKNTHAETHSNYTVDIVQIFRTSREGEAERFRKPASLFDSTANSSSLLLNALVNLSYRFKYCVFTKGLGGTALDPSKAQELEDGLVVPLGKPKTESGKKGDLLYNEYIVYNVEQIRMRYIVHLNFNFKTTS*

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