Glyma02g02060 - SoyBase

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Report for Sequence Feature Glyma02g02060

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1491714
stop:	1492680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g02060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02816	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function, DUF538 \| chr1:621637-622137 FORWARD LENGTH=166	SoyBase	E_val: 1.00E-47	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04398	PFAM	Protein of unknown function, DUF538	JGI		ISS
UniRef100_I1JBK5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JBK5_SOYBN	SoyBase	E_val: 5.00E-92	ISS
UniRef100_Q9SRX5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F22D16.19 protein n=2 Tax=Arabidopsis thaliana RepID=Q9SRX5_ARATH	SoyBase	E_val: 7.00E-45	ISS

Expression Patterns of Glyma02g02060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g02060

Paralog	Evidence	Comments
Glyma10g02190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g02060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g017000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g02060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g02060

Limit To All Plant Sequences

>Glyma02g02060.1   sequence type=CDS   gene model=Glyma02g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAGAGCTTTCACTTTCCGGCAGGCATTCTCCCGAAAAGAGTGACCGGCTACGAGCTGGACCCGTCCAGCGGAAAATTCCACGCCGATCTGAACGGTTCGTGCAGTTTCTCCCTCGAAGGTTCGTACCAGCTGAGTTACCAGAAAATCATCACCGTCTACGTATCCGACGGCAGGCTCACCGAACTCCGGGGGATTAGCGTGAAGATCCTCTTCTTCTGGCTCAGCATTCTCGACGTCGTTCGTTTCGGCGATGATCTCGATTTCTCCGTCGGCGTCGCCTCCGCTTCCTTTCCCCTCGATAACTTCTTCGTCTCCCCGCAGTGCGGTAGCGGCTTGGATTGCGATGGTTTTCGAATTAGGAAACTCAAATTGAGAAACGGAAAACCCTCCCTTTCCTCCGTTTAG

Predicted protein sequences of Glyma02g02060

Limit To All Plant Sequences

>Glyma02g02060.1   sequence type=predicted peptide   gene model=Glyma02g02060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLESFHFPAGILPKRVTGYELDPSSGKFHADLNGSCSFSLEGSYQLSYQKIITVYVSDGRLTELRGISVKILFFWLSILDVVRFGDDLDFSVGVASASFPLDNFFVSPQCGSGLDCDGFRIRKLKLRNGKPSLSSV*

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