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Report for Sequence Feature Glyma02g02040

Feature Type:gene_model
Chromosome:Gm02
Start:1477407
stop:1477991
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g02040
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16720AT Annotation by Michelle Graham. TAIR10: TOXICOS EN LEVADURA 2 | chr3:5692880-5693794 FORWARD LENGTH=304 SoyBaseE_val: 1.00E-32ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0002679GO-bp Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009612GO-bp Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PTHR22764:SF15Panther ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G3CHK4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ring zinc finger transcription factor n=1 Tax=Citrus trifoliata RepID=G3CHK4_PONTR SoyBaseE_val: 3.00E-33ISS
UniRef100_I1JBK3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBK3_SOYBN SoyBaseE_val: 2.00E-129ISS

Expression Patterns of Glyma02g02040
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g02040 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g016800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g02040
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g02040
>Glyma02g02040.2   sequence type=CDS   gene model=Glyma02g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCCAGAAACTCAAGAAAAGTATGCCAGTAATGGCAAGGTCATGTTTGGCTCCACCATCCTTCTCTTCCTAATAGTAATCATCGTAGTTTTCGTTCACACCTTCCGCGACTCATGCTTCCGCCGCCACCGCCGCCACCGCCACGCCATTCGAACCGTTTCCTCCGTGGCTTTTAACGAGGGCCTTTGCCCTTCCGTTCTCAAATTCCTTCCCACCTTTACGTATTCCTCCGACACCCACCTCTCCATCCACGATTGCGCCGTCTGCTTGTCGGAGTTCGCCGACGGCGAAGAAGGCCGCTTCCTTCCGAACTGTAACCACGCTTTCCACGCCCATTGCGTTGACATTTGGTTCCACTCTCACTCTAACTGTCCACTTTGCCGAACCCCGGTTCGCCGATACGCCGCGCCAGTCCAACCGTCCTCTGATACTGAACCGGGTTCGGTGGGTTTATCTTCTTATCCTGCACCGGTTTGGTGCCCGAGAAAGTCGTTGGAGCTCGTAGGCATGACAGCGGAGTTAGAACAAAACCCGGTTTCGGAGCCGGGTCATGGATCCACGATATCACGGGTTGGGAATTGA
Predicted protein sequences of Glyma02g02040
>Glyma02g02040.2   sequence type=predicted peptide   gene model=Glyma02g02040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPETQEKYASNGKVMFGSTILLFLIVIIVVFVHTFRDSCFRRHRRHRHAIRTVSSVAFNEGLCPSVLKFLPTFTYSSDTHLSIHDCAVCLSEFADGEEGRFLPNCNHAFHAHCVDIWFHSHSNCPLCRTPVRRYAAPVQPSSDTEPGSVGLSSYPAPVWCPRKSLELVGMTAELEQNPVSEPGHGSTISRVGN*






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