SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16720 | AT | Annotation by Michelle Graham. TAIR10: TOXICOS EN LEVADURA 2 | chr3:5692880-5693794 FORWARD LENGTH=304 | SoyBase | E_val: 1.00E-32 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR22764 | Panther | RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). | JGI | ISS | |
| PTHR22764:SF15 | Panther | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEI | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| UniRef100_G3CHK4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ring zinc finger transcription factor n=1 Tax=Citrus trifoliata RepID=G3CHK4_PONTR | SoyBase | E_val: 3.00E-33 | ISS |
| UniRef100_I1JBK3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBK3_SOYBN | SoyBase | E_val: 2.00E-129 | ISS |
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Glyma02g02040 not represented in the dataset |
Glyma02g02040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g016800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g02040.2 sequence type=CDS gene model=Glyma02g02040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACCCAGAAACTCAAGAAAAGTATGCCAGTAATGGCAAGGTCATGTTTGGCTCCACCATCCTTCTCTTCCTAATAGTAATCATCGTAGTTTTCGTTCACACCTTCCGCGACTCATGCTTCCGCCGCCACCGCCGCCACCGCCACGCCATTCGAACCGTTTCCTCCGTGGCTTTTAACGAGGGCCTTTGCCCTTCCGTTCTCAAATTCCTTCCCACCTTTACGTATTCCTCCGACACCCACCTCTCCATCCACGATTGCGCCGTCTGCTTGTCGGAGTTCGCCGACGGCGAAGAAGGCCGCTTCCTTCCGAACTGTAACCACGCTTTCCACGCCCATTGCGTTGACATTTGGTTCCACTCTCACTCTAACTGTCCACTTTGCCGAACCCCGGTTCGCCGATACGCCGCGCCAGTCCAACCGTCCTCTGATACTGAACCGGGTTCGGTGGGTTTATCTTCTTATCCTGCACCGGTTTGGTGCCCGAGAAAGTCGTTGGAGCTCGTAGGCATGACAGCGGAGTTAGAACAAAACCCGGTTTCGGAGCCGGGTCATGGATCCACGATATCACGGGTTGGGAATTGA
>Glyma02g02040.2 sequence type=predicted peptide gene model=Glyma02g02040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPETQEKYASNGKVMFGSTILLFLIVIIVVFVHTFRDSCFRRHRRHRHAIRTVSSVAFNEGLCPSVLKFLPTFTYSSDTHLSIHDCAVCLSEFADGEEGRFLPNCNHAFHAHCVDIWFHSHSNCPLCRTPVRRYAAPVQPSSDTEPGSVGLSSYPAPVWCPRKSLELVGMTAELEQNPVSEPGHGSTISRVGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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