Glyma02g01990 - SoyBase

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Report for Sequence Feature Glyma02g01990

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1452173
stop:	1455151
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02290	AT	Annotation by Michelle Graham. TAIR10: glycosyl hydrolase 9B13 \| chr4:1002654-1005125 REVERSE LENGTH=516	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
PTHR22298	Panther	ENDO-1,4-BETA-GLUCANASE	JGI		ISS
PF00759	PFAM	Glycosyl hydrolase family 9	JGI		ISS
UniRef100_B9GSC6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyl hydrolase family 9 n=1 Tax=Populus trichocarpa RepID=B9GSC6_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1JBJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBJ9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01990

Paralog	Evidence	Comments
Glyma10g02130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g016400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01990

Limit To All Plant Sequences

>Glyma02g01990.1   sequence type=CDS   gene model=Glyma02g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTTTCTCCCTTTCATTCACCACTCTGCTTTCCCTTCTCTCTGTCATTCTGCTTCATGTCAATGCCTTCCCCGTTCATTTCAATCACCCCATACACCATCGCCACCCTCGCTTTGCCGCTCATAACTACAGAGACGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAAGCTCCCTCCTAACCAGAGAATGTCTTGGAGGAGAGACTCTGGCCTCTCTGATGGCTCTGCCATGCATGTTGATTTGGTTGGAGGGTACTATGATGCTGGGGACAATGTGAAATTTGGTTTTCCCATGGCATTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGCCTAATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGCACTGATTATCTTCTCAAAGCCACTGCACATCCAAACACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCATGCTTGTTGGGAGAGACCAGAGGACATGGATACTCCAAGAAGCGTGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCAGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAAGTGACCCCACATACTCCAAAATTTTAGTCAGGAGAGCCATCAGGGTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATCAAAGTTAATGGCCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCGGACAATTTCGTCTGTTCCCTAATTTCTGGGACCTCTTTGTCTTCCACCCAATATACCCCAGGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTGCTAACATATGCCAAATACTTGACCCAATCCCATATGCTTGTTAACTGTGGCGGAATCACCGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGTCCACGGTACCCACGAAGGATACACCATAGGGGCTCATCTCTACCGTCGATTGCTGTACACCCGGGAAAGATCCAGTGTTCCGCAGGGTTCAGTGTGATGAATTCGCAATCCCCCAACCCAAACATTCTCGTGGGGGCCATTGTTGGTGGACCAGATCGGCATGATAGGTTCCCAGATCAACGGTCAGATTATGAGCAATCGGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCCTATCTTGCACACTCATTTGGTCAACTCTAG

Predicted protein sequences of Glyma02g01990

Limit To All Plant Sequences

>Glyma02g01990.1   sequence type=predicted peptide   gene model=Glyma02g01990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTFSLSFTTLLSLLSVILLHVNAFPVHFNHPIHHRHPRFAAHNYRDALTKSILFFEGQRSGKLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSKILVRRAIRVFQFADKYRGSYSNALKPYVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLISGTSLSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQSHMLVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAIVGGPDRHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL*

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