Glyma02g01980 - SoyBase

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Report for Sequence Feature Glyma02g01980

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1445856
stop:	1448926
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02790	AT	Annotation by Michelle Graham. TAIR10: polygalacturonase 4 \| chr1:610681-612225 REVERSE LENGTH=422	SoyBase	E_val: 5.00E-113	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
PF00295	PFAM	Glycosyl hydrolases family 28	JGI		ISS
UniRef100_G7IEL1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=1 Tax=Medicago truncatula RepID=G7IEL1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337A82	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337A82 related cluster n=1 Tax=unknown RepID=UPI0002337A82	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01980

Paralog	Evidence	Comments
Glyma10g02120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g016300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01980

Limit To All Plant Sequences

>Glyma02g01980.1   sequence type=CDS   gene model=Glyma02g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACGGCGAGGGCCCTTTTTCTCTTAGGGGCTGCTCTCCTCTCTTGCACCTTGATAGGTGCATCTTCGCGTGGCGTTGAGAATCGCCGTAGCCTCCTCCTTCCAGTTCCAAATAATGGTCCTGCAATTTTTGATGTGACGAAATTCGGTGCTGTGGCAGATGACCAGACTGACAATATTGATGCATTTAGGGCTGCATGGGGAGAAGCATGCAAAAACAGTACTACTCAGGCAAAGGTTTTGATCCCAGCGGGAACATTTCGTGCAGCACAAACTATGTTTGCAGGGCCATGTACCAGCCCAAAACCTATAATTGTTGAAGTTATAGGAACTGTTAAAGCGAACACAGATCCATCTGAGTATGTGACTCCAGAATGGTTCAGCTTTCTAGACATTGACGGCCTTGTGTTGACTGGCAATGGAGTTTTTGATGGCCAAGGAGCCGCTAGTTGGCCATATAACGACTGCGCCAAGACCAAAGGCGATTGTGCTCCCCTTCCAGCTTCTCTGAAATTCGCCAAGGTTAACAATTCCATAGTGACGGACATCACCTCGTTGAACAGCATGCAGTTCCACTTCCACATTCACGGATGCAGCAACTTTTCACTGTCAAACATCAACATAACAGCGCCGGGGAACAGTCCGAACACAGACGGCATGCACATAAGCTCGAGCGACAGTATCAAGGTTTTCGACAGCGTTATCGGAACCGGCGATGACTGCATTTCCATCGGACACAGCACCACCAACATTGCCATCACCAACATCACCTGCGGCCCCGGTCATGGCATCAGCGTCGGAAGCCTTGGTAAGAGGCCAGAGGAGCGAAGCGTGAACGGCATCAGCGTTACGAATTGCACGTTCGTGAATACGACCAACGGTGCCAGAATCAAAACGTGGATGGGGACAGTGCCGGCGGAAGCTACGAACATTACCTATGAAGGTCTCATCATGAAGGGTGTTCAGAATCCTATCATTATTGACCAGAGTTATGGCTCCAACAAGAAGACAACGCCATCAACTTCGGTGTGGAAGATCAGCAATATTCATTTCCGTAAGATACAAGGAACTACAGTCTCAAACATTGCAGTGTCCCTGCAATGCAGCACAAGCAACCCCTGCGAGGGTGTTGAGATAGCCGATGTAGATTTGGCTTATTCTGGCGGTCCTCACAATACAACTTTTGTATCCTCTTGCTCCAATGCTAAAGCTGTTTTTGGAGGGATACTTAACCCACCAGCTTGCTAA

Predicted protein sequences of Glyma02g01980

Limit To All Plant Sequences

>Glyma02g01980.1   sequence type=predicted peptide   gene model=Glyma02g01980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATARALFLLGAALLSCTLIGASSRGVENRRSLLLPVPNNGPAIFDVTKFGAVADDQTDNIDAFRAAWGEACKNSTTQAKVLIPAGTFRAAQTMFAGPCTSPKPIIVEVIGTVKANTDPSEYVTPEWFSFLDIDGLVLTGNGVFDGQGAASWPYNDCAKTKGDCAPLPASLKFAKVNNSIVTDITSLNSMQFHFHIHGCSNFSLSNINITAPGNSPNTDGMHISSSDSIKVFDSVIGTGDDCISIGHSTTNIAITNITCGPGHGISVGSLGKRPEERSVNGISVTNCTFVNTTNGARIKTWMGTVPAEATNITYEGLIMKGVQNPIIIDQSYGSNKKTTPSTSVWKISNIHFRKIQGTTVSNIAVSLQCSTSNPCEGVEIADVDLAYSGGPHNTTFVSSCSNAKAVFGGILNPPAC*

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