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Report for Sequence Feature Glyma02g01970

Feature Type:gene_model
Chromosome:Gm02
Start:1435017
stop:1436395
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47540AT Annotation by Michelle Graham. TAIR10: Pollen Ole e 1 allergen and extensin family protein | chr2:19505901-19506504 FORWARD LENGTH=173 SoyBaseE_val: 2.00E-44ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF01190PFAM Pollen proteins Ole e I like JGI ISS
UniRef100_E0A235UniRef Annotation by Michelle Graham. Most informative UniRef hit: Drought resistance protein n=1 Tax=Glycine max RepID=E0A235_SOYBN SoyBaseE_val: 1.00E-121ISS
UniRef100_I1JBJ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBJ7_SOYBN SoyBaseE_val: 4.00E-143ISS

Expression Patterns of Glyma02g01970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01970
ParalogEvidenceComments
Glyma10g02090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g016200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g01970
>Glyma02g01970.1   sequence type=CDS   gene model=Glyma02g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTCCTTCGATCTACCTTGGCAACCTCAATGGTTCTTTTAGCAATGCTATCCATTGCCTCCGCAACTGACTATTATGGATATGGTCCAACACCAAAGCTTGAGAACCCCAAACCCAAAACAGATCACAAATTTGACGACAAACCACACCCTACAGAACCAGATTATTATGCAGTGCCCAAATCAAAAGGAAACGATGAACTACATCTGCTTCCCACAATCATTGGTGTCCAAGGAGTTGTTTTATGTAAATCAGGCTCCAATTATTCCCCAATTCAAGGAGCCGTGGCACGAGTTACATGTGGATGTGAGGATGAGCAGGGGTACGATACAGGTCCTACATCAGTGTTGAGTCATGTGACAGATAGTAAAGGTTATTTCTTGGCCACATTGTCATTTGGATCTAAATTGAAGATCACTGAGTGCAAGGCATACTTGGAGACTTCTCCATTGGAAACATGTAAAGTTCCCACCGATGTCAACTACGGGATCAGTGGTGCTCGCCTCTCTTCTTATCGCCTCCTTCAAAATAACATCAAATTGTACTCTGTGGGGCCTTTCTTCTGCACCTCCCAACCACTCCCTAACGGTTATTAA
Predicted protein sequences of Glyma02g01970
>Glyma02g01970.1   sequence type=predicted peptide   gene model=Glyma02g01970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLRSTLATSMVLLAMLSIASATDYYGYGPTPKLENPKPKTDHKFDDKPHPTEPDYYAVPKSKGNDELHLLPTIIGVQGVVLCKSGSNYSPIQGAVARVTCGCEDEQGYDTGPTSVLSHVTDSKGYFLATLSFGSKLKITECKAYLETSPLETCKVPTDVNYGISGARLSSYRLLQNNIKLYSVGPFFCTSQPLPNGY*






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