Glyma02g01930 - SoyBase

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Report for Sequence Feature Glyma02g01930

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1409116
stop:	1418236
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50950	AT	Annotation by Michelle Graham. TAIR10: FUMARASE 2 \| chr5:20729687-20733636 FORWARD LENGTH=499	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0006106	GO-bp	Annotation by Michelle Graham. GO Biological Process: fumarate metabolic process	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0042128	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate assimilation	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0045239	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: tricarboxylic acid cycle enzyme complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004333	GO-mf	Annotation by Michelle Graham. GO Molecular Function: fumarate hydratase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
KOG1317	KOG	Fumarase	JGI		ISS
PTHR11444	Panther	ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE	JGI		ISS
PTHR11444:SF1	Panther	FUMARATE HYDRATASE CLASS II	JGI		ISS
PF00206	PFAM	Lyase	JGI		ISS
PF10415	PFAM	Fumarase C C-terminus	JGI		ISS
UniRef100_G7IEJ2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Fumarate hydratase n=1 Tax=Medicago truncatula RepID=G7IEJ2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JBJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBJ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g01930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g01930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g015800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01930

Limit To All Plant Sequences

>Glyma02g01930.1   sequence type=CDS   gene model=Glyma02g01930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTTTCCTTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGTGGTGAGAAGTTTGTGCACCCAAATGACCATGTCAATAGATCACAGTCTTCTAATGATACATTCCCAACTGTAATGCACATTGCAGCCGCAACGGAAATAAACTCAAGACTGATCCCCAGCCTTAAAACGTTACACGATACTCTAAACTCAAAGTCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAGTGAAGTACGGTATTGATAGAGTAATTGACACTTTGCCACGCATGTATCAGCTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACCAAGAAGGGGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTGTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTGTTCAAGCCAATGATTGCCAATTGTCTCCTGCATTCGCTGAGACTGCTTGGAGATTCGTCTGCTTCCTTTGAAAAGAATTGTTTGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTTATGCTTGTCACATCCTTAAACCCAAAAATCGGTTATGACAAGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGA

Predicted protein sequences of Glyma02g01930

Limit To All Plant Sequences

>Glyma02g01930.1   sequence type=predicted peptide   gene model=Glyma02g01930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSFREERDTFGAIQVPSEKLWGAQTQRSLQNFDIGGPRERMPEPIIRAFGVLKKCAAKVNMEYGLDPNVGEAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHDTLNSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVIDTLPRMYQLAQGGTAVGTGLNTKKGFDAKIAAAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTVVASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMIANCLLHSLRLLGDSSASFEKNCLRGIQANRERISKLLHESLMLVTSLNPKIGYDKAATVAKTAHKEGTTLKEAALKLGVLCSEDFDKLVVPEKMLGPSD*

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