SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50950 | AT | Annotation by Michelle Graham. TAIR10: FUMARASE 2 | chr5:20729687-20733636 FORWARD LENGTH=499 | SoyBase | E_val: 0 | ISS |
| GO:0006099 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle | SoyBase | N/A | ISS |
| GO:0006106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fumarate metabolic process | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0042128 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate assimilation | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0045239 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: tricarboxylic acid cycle enzyme complex | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004333 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: fumarate hydratase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0016829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lyase activity | SoyBase | N/A | ISS |
| KOG1317 | KOG | Fumarase | JGI | ISS | |
| PTHR11444 | Panther | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE | JGI | ISS | |
| PTHR11444:SF1 | Panther | FUMARATE HYDRATASE CLASS II | JGI | ISS | |
| PF00206 | PFAM | Lyase | JGI | ISS | |
| PF10415 | PFAM | Fumarase C C-terminus | JGI | ISS | |
| UniRef100_G7IEJ2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Fumarate hydratase n=1 Tax=Medicago truncatula RepID=G7IEJ2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JBJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JBJ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g01930 not represented in the dataset |
Glyma02g01930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g015800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g01930.1 sequence type=CDS gene model=Glyma02g01930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCACTTTCCTTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCAACGTCGGAGAAGCAATAATGCAAGCAGCACAAGAAGTAGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGGAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTGGCCATAAGCGTGGTGAGAAGTTTGTGCACCCAAATGACCATGTCAATAGATCACAGTCTTCTAATGATACATTCCCAACTGTAATGCACATTGCAGCCGCAACGGAAATAAACTCAAGACTGATCCCCAGCCTTAAAACGTTACACGATACTCTAAACTCAAAGTCAGTTGAATTTAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGATATACTACACAAGTGAAGTACGGTATTGATAGAGTAATTGACACTTTGCCACGCATGTATCAGCTTGCCCAGGGTGGTACAGCTGTAGGGACTGGATTGAATACCAAGAAGGGGTTTGATGCCAAGATAGCAGCAGCAGTAGCTGAGGAAACAAATCTGCCTTTTGTCACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTGTTGTGGCTTCATTGATGAAGATTGCTAATGATATACGGTTATTGGGAAGTGGTCCACGCTGCGGTCTTGGGGAGCTCATTCTTCCTGAAAACGAACCAGGAAGCAGTATTATGCCTGGGAAGGTTAACCCGACCCAGTGTGAGGCTTTGACGATGGTGTGTGCACAGGTCATGGGAAACCATGTTGCAATCACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTGTTCAAGCCAATGATTGCCAATTGTCTCCTGCATTCGCTGAGACTGCTTGGAGATTCGTCTGCTTCCTTTGAAAAGAATTGTTTGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTTATGCTTGTCACATCCTTAAACCCAAAAATCGGTTATGACAAGGCAGCAACAGTTGCCAAGACAGCTCACAAAGAGGGGACTACTCTTAAGGAAGCTGCATTGAAACTCGGAGTGCTCTGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGA
>Glyma02g01930.1 sequence type=predicted peptide gene model=Glyma02g01930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALSFREERDTFGAIQVPSEKLWGAQTQRSLQNFDIGGPRERMPEPIIRAFGVLKKCAAKVNMEYGLDPNVGEAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLIPSLKTLHDTLNSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVIDTLPRMYQLAQGGTAVGTGLNTKKGFDAKIAAAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTVVASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSNGHFELNVFKPMIANCLLHSLRLLGDSSASFEKNCLRGIQANRERISKLLHESLMLVTSLNPKIGYDKAATVAKTAHKEGTTLKEAALKLGVLCSEDFDKLVVPEKMLGPSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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