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Report for Sequence Feature Glyma02g01920

Feature Type:gene_model
Chromosome:Gm02
Start:1396262
stop:1401801
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g01920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G47510AT Annotation by Michelle Graham. TAIR10: fumarase 1 | chr2:19498614-19502020 FORWARD LENGTH=492 SoyBaseE_val: 0ISS
GO:0006099GO-bp Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle SoyBaseN/AISS
GO:0006106GO-bp Annotation by Michelle Graham. GO Biological Process: fumarate metabolic process SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0045239GO-cc Annotation by Michelle Graham. GO Cellular Compartment: tricarboxylic acid cycle enzyme complex SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0004333GO-mf Annotation by Michelle Graham. GO Molecular Function: fumarate hydratase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016829GO-mf Annotation by Michelle Graham. GO Molecular Function: lyase activity SoyBaseN/AISS
KOG1317 KOG Fumarase JGI ISS
PTHR11444Panther ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE JGI ISS
PTHR11444:SF1Panther FUMARATE HYDRATASE CLASS II JGI ISS
PF00206PFAM Lyase JGI ISS
PF10415PFAM Fumarase C C-terminus JGI ISS
UniRef100_P93033UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fumarate hydratase 1, mitochondrial n=1 Tax=Arabidopsis thaliana RepID=FUM1_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI0001890B02UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0001890B02 related cluster n=1 Tax=unknown RepID=UPI0001890B02 SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g01920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01920
ParalogEvidenceComments
Glyma10g02040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g015700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g01920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g01920
>Glyma02g01920.1   sequence type=CDS   gene model=Glyma02g01920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTGTACGTGCTCTCGCGTCGTTTATCAGCTGGATCCAACTCAACCACGCTCCTCGCCTTGCGTTTTGTTTCCTCTACCAGATCCTACTCCTCTTCCTTCAGGGAAGAAAGAGATACCTTTGGAGCCATTCAAGTTCCCTCCGAGAAATTATGGGGAGCACAAACTCAAAGATCGTTGCAGAACTTCGATATCGGTGGGCCCCGCGAACGCATGCCCGAACCCATCATTCGCGCCTTTGGCGTCTTGAAGAAATGCGCTGCTAAGGTGAACATGGAGTATGGTCTTGATCCCGCCGTTGGAAAAGCGATTATGCAAGCGGCACAAGAAGTGGCCGAGGGAAAACTAAACGACCATTTTCCTCTCGTTGTATGGCAAACTGGCAGTGGCACTCAAAGTAACATGAATGCTAACGAGGTTATTGCAAACCGAGCAGCAGAGATTCTTTGGCATAAGCGGGGTGGGAAGTTAGTGCACCCAAATGACCATGTCAATAGATCACAGTCTTCAAATGATACATTCCCAACTGTAATGCACATTGCAGCCGCAATGGAAATAAACTCAAGACTAATTCCCAGCCTGAAAACCTTACATGGTACACTAAACTCAAAGTCAATTGAATTCAAAGATATTGTCAAGATTGGACGCACTCATACTCAAGATGCAACACCTTTGACTCTTGGACAAGAGTTTAGTGGGTATACTACACAAGTGAAGTATGGTATTGATAGAGTAATTGGCACTTTGCCGCACATGTATCAGCTTGCCCAGGGTGGGACAGCTGTAGGGACTGGATTGAATACAAAGAAGGGGTTTGATGCCAAAATAGCAGCAGCAGTAGCTGAGGAAACCAATCTGCCTTTTGTTACGGCAGAAAATAAGTTTGAGGCCTTGGCTGCCCATGATGCTTTTGTTGAAACTAGTGGAGCCCTTAACACTATTGCGGCTTCTTTGATGAAGATTGCTAATGACATACGGTTGTTAGGAAGTGGTCCACGCTGCGGTCTTGGTGAACTCATTCTTCCTGAAAACGAACCAGGGAGCAGTATCATGCCTGGGAAGGTTAACCCTACCCAGTGTGAGGCTTTGACAATGGTGTGTGCCCAGGTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATTCACTGAGACTGCTTGGAGATTCATCTGCTTCCTTTGAAAAGAATTGCGTGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAGTCACTAATGCTTGTCACATCCTTAAACCCGAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAGGGGTGTACTCTTAAGGAAGCTGCATTGAAACTCGGAGTGCTCAGCTCTGAAGATTTTGACAAGCTTGTGGTACCTGAGAAAATGCTTGGACCATCTGATTGA
Predicted protein sequences of Glyma02g01920
>Glyma02g01920.1   sequence type=predicted peptide   gene model=Glyma02g01920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALYVLSRRLSAGSNSTTLLALRFVSSTRSYSSSFREERDTFGAIQVPSEKLWGAQTQRSLQNFDIGGPRERMPEPIIRAFGVLKKCAAKVNMEYGLDPAVGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILWHKRGGKLVHPNDHVNRSQSSNDTFPTVMHIAAAMEINSRLIPSLKTLHGTLNSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVIGTLPHMYQLAQGGTAVGTGLNTKKGFDAKIAAAVAEETNLPFVTAENKFEALAAHDAFVETSGALNTIAASLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAVTVGGSNGHFELNVFKPMIASCLLHSLRLLGDSSASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDKAAAVAKTAHKEGCTLKEAALKLGVLSSEDFDKLVVPEKMLGPSD*






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